BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1640.p
         (104 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980128|ref|YP_001353166.1| hypothetical protein mma_1476 [...   134   1e-33

>gi|152980128|ref|YP_001353166.1| hypothetical protein mma_1476
           [Janthinobacterium sp. Marseille]
          Length = 92

 Score =  134 bits (337), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 81/94 (86%), Gaps = 3/94 (3%)

Query: 10  VILLAALAANLPFFNQQLFGLIPLSRNAAWVKPVWVRLLELVVLYFLVGLVARQLEAGIG 69
           +ILLA  +ANLPFFN++LF ++PLS  +   KPVW+RL+EL VLY LVGL+AR LE+ IG
Sbjct: 1   MILLALFSANLPFFNERLFAVLPLSSTS---KPVWLRLIELFVLYLLVGLIARMLESRIG 57

Query: 70  NLFSQGWEFYAITGCLFLVLAYPGYVMRYLRKQH 103
           ++F QGWEF+AITGCLF+VLAYPG+VMRY+RK+H
Sbjct: 58  SVFPQGWEFFAITGCLFIVLAYPGFVMRYMRKRH 91


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.333    0.145    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 235,394
Number of extensions: 8039
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 34
Effective length of database: 962,231
Effective search space: 32715854
Effective search space used: 32715854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 122 (51.6 bits)