BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1639.p (502 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980285|ref|YP_001353165.1| NADH dehydrogenase I chain N [J... 714 0.0 gi|152981941|ref|YP_001354946.1| putative monovalent cation/H+ a... 87 2e-18 gi|152980500|ref|YP_001353163.1| NADH dehydrogenase I chain L [J... 87 3e-18 gi|152980305|ref|YP_001353164.1| NADH dehydrogenase I chain M [J... 74 2e-14 >gi|152980285|ref|YP_001353165.1| NADH dehydrogenase I chain N [Janthinobacterium sp. Marseille] Length = 494 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/495 (71%), Positives = 421/495 (85%), Gaps = 1/495 (0%) Query: 1 MNNMNLIPVYPEIFLLIATSAILLIDMFLPEAKRVITYLLSLAALVVCAVLTFGDLNSGA 60 MNN+NLIPV PEIFL IA AILLID+FL + KR ITY+LS+ AL+VC VL+ D N+GA Sbjct: 1 MNNLNLIPVLPEIFLAIAICAILLIDLFLKDEKRHITYVLSIIALLVCGVLSLSDFNTGA 60 Query: 61 TVYTFNNMFVSDPLANLLKLFTYLGVGVTLIYSRQYNTARGITGGALGGEYYVLALFALL 120 TVYTFNNMFVSDP+++LLK+ +Y+ VG+TL+YSRQY R + G LGGE+Y+LALF+LL Sbjct: 61 TVYTFNNMFVSDPMSSLLKICSYVAVGLTLVYSRQYGLDREMVNGRLGGEFYLLALFSLL 120 Query: 121 GQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALASGFLLYGM 180 GQMVMIS N+FL IYLGLELMSLSLYALVA+RRDHA STEA MKYFILGALASGFLLYG+ Sbjct: 121 GQMVMISANNFLIIYLGLELMSLSLYALVAMRRDHAISTEAAMKYFILGALASGFLLYGI 180 Query: 181 SMLYGATGGALELNEVFRAIASGTVDRTALVFGIVFVVAGLAFKLGAVPFHMWVPDVYQG 240 SMLYGATG +L+L EV RA A+GTV++ L+FG+VF+V+GLAFKLG VPFHMWVPDVYQG Sbjct: 181 SMLYGATG-SLDLTEVARATAAGTVNKPILIFGLVFLVSGLAFKLGVVPFHMWVPDVYQG 239 Query: 241 SPTPVTLLLGAAPKLAAFAIIFRLLVEGMLPLAEQWQQMLMVLAVLSIILGNVTAIAQTN 300 +PT VTLLLG APKLAAFAI RLLVEG+ LA WQQML +LAVLS+ +GNVTAI QTN Sbjct: 240 APTSVTLLLGGAPKLAAFAITIRLLVEGLPALAVDWQQMLTILAVLSMAIGNVTAIVQTN 299 Query: 301 IKRMLAYSTISHMGFMLLGMMSGVIDSNLFSAVNAYSSSLFYAITYVITTLGSFGVIILL 360 IKRMLAYSTIS MGF+LLG++SGV+ S N YS+++FY+ITYV+TTLG FGVI+LL Sbjct: 300 IKRMLAYSTISQMGFILLGLLSGVVVGADGSTTNGYSAAMFYSITYVLTTLGIFGVIMLL 359 Query: 361 SRSGFEADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATGQLW 420 SR+GFEAD +DDFKGLNQRSPWFA V +++MFSLAG+PP+VGFYAKLSVLQA ++TGQ+W Sbjct: 360 SRAGFEADNIDDFKGLNQRSPWFALVTLMLMFSLAGVPPVVGFYAKLSVLQAVLSTGQIW 419 Query: 421 LPVLAVIFSLIGAFYYIRVVKVMYFDEPTDTSKIVATPEMRVVLSFNGIAAVALGLWPGH 480 L ++AV+FSLIGA+YY+R+VKVMYFDEP D SKIV + ++ V LS NG + + LGL PG Sbjct: 420 LAIVAVLFSLIGAYYYLRIVKVMYFDEPLDNSKIVVSKDVTVALSVNGASLLVLGLVPGP 479 Query: 481 LMDACTNAIVTTLAT 495 LM AC AIV TLA+ Sbjct: 480 LMTACAAAIVKTLAS 494 >gi|152981941|ref|YP_001354946.1| putative monovalent cation/H+ antiporter subunit A [Janthinobacterium sp. Marseille] Length = 974 Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 102/379 (26%), Positives = 171/379 (45%), Gaps = 37/379 (9%) Query: 116 LFALLGQM--VMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILGALAS 173 L A +G M V++SGN + + + EL SL+ + L+ + F + A A Sbjct: 119 LLAFMGSMLGVVLSGN-LIQLVVFWELTSLTSFLLIGYWHHRIDARRGARMAFTVTA-AG 176 Query: 174 GFLLYGMSMLYGATGGALELNEVFRAIASGTVDRTALVF--GIVFVVAGLAFKLGAVPFH 231 G L ++ G G+ +++ V +A+G R + +V V G K PFH Sbjct: 177 GLCLLCGVLIIGHIVGSYDMDIV---LAAGDKIRAHDWYLAALVLVALGALTKSAQFPFH 233 Query: 232 MWVPDVYQGSPTPVTLLLGAAPKLAAFAIIFRLLVEGMLPLAEQWQQMLMVLAVLSIILG 291 W+P +PTPV+ L +A + A + + L E+W ++ V +++LG Sbjct: 234 FWLPHA-MAAPTPVSSYLHSATMVKA-GVFLLIRFWPALSGTEEWTWLIAGAGVCTLLLG 291 Query: 292 NVTAIAQTNIKRMLAYSTISHMGFM--LLGMMS--GVIDSNLFSAVNA--YSSSLFYAIT 345 + AI Q ++K +LAYSTISH+G + LLG+ S GV+ + +F +N + +SLF A Sbjct: 292 SFIAIFQHDLKGLLAYSTISHLGLITVLLGIGSPLGVV-AAIFHTLNHAIFKASLFMAAG 350 Query: 346 YVITTLGSFGVIILLSRSGFEADTLDDFKGLNQRSPWFAAVMMIMMFSLAGIPPLVGFYA 405 + G+ + +L +GL P A + ++ S+AG+P L GF + Sbjct: 351 IIDHETGTRDMRVL--------------RGLRHAIPITATLAIVASASMAGVPLLNGFLS 396 Query: 406 KLSVLQAAMATG---QLWLPVLAVIFSLIGAFYYIRVVKVMYFDEPTDTSKIVATPE--M 460 K + G W+ AV + Y +R + V + P D K P M Sbjct: 397 KEMFFAETLHVGGTENWWMSYAAVAMGIFSVAYSLRFISVFFGQLPKDLPKTPHEPPRWM 456 Query: 461 RVVLSFNGIAAVALGLWPG 479 R + F + + +G+ PG Sbjct: 457 RFPVEFLVLLCLIVGIVPG 475 >gi|152980500|ref|YP_001353163.1| NADH dehydrogenase I chain L [Janthinobacterium sp. Marseille] Length = 699 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 103/362 (28%), Positives = 173/362 (47%), Gaps = 56/362 (15%) Query: 110 EYYVLALFALLGQMVMISGNSFLSIYLGLELMSLSLYALVALRRDHAASTEAGMKYFILG 169 Y L FA+L +++ N+FL ++ G E + L Y L+ + A MK F++ Sbjct: 127 SYISLFTFAML---MLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTKPTAIVANMKAFLVN 183 Query: 170 ALAS-GFLLYGMSMLYGATGGALELNEVF---RAIASGTV---DRTALVFGIVFVVAGLA 222 + GF+L G+ +L A G+++ EVF +A+ T+ D L + + G Sbjct: 184 RVGDFGFIL-GIGLLL-AYAGSMDYAEVFAKKEQLATLTLPGTDWMLLTVACICLFIGAM 241 Query: 223 FKLGAVPFHMWVPDVYQGSPTPVTLLLGAAPKLAAFAIIFRLLVEGMLPLAEQWQQMLMV 282 K P H+W+PD +G PTP++ L+ AA + A IF +V M PL E L Sbjct: 242 GKSAQFPLHVWLPDSMEG-PTPISALIHAATMVTAG--IF--MVARMSPLFELSDTALSF 296 Query: 283 LAVLSIILGNVTA-------IAQTNIKRMLAYSTISHMGFMLLGMMSGVIDSNLFSAVNA 335 + +I+G++TA I Q +IKR++AYST+S +G+M + + +A Sbjct: 297 V----LIIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVAL-----------GASA 341 Query: 336 YSSSLFYAITYVITTLGSFGVIILLSRS----GFEADT-LDDFKGLNQRSPWFAAVMMIM 390 YS ++F+ +T+ F ++ L+ G D + + GL + P ++ Sbjct: 342 YSVAVFHLMTHAF-----FKALLFLAAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLLG 396 Query: 391 MFSLAGIPPLVGFYAKLSVLQAAMAT-----GQLWLPVLAVIFSLIGAFYYIRVVKVMYF 445 +L G P GFY+K S+++A AT G VLA +F + AFY R+ +++ Sbjct: 397 SLALIGTPFFSGFYSKDSIIEAVHATTLFGSGFANFAVLAGVF--VTAFYSFRMYFLVFH 454 Query: 446 DE 447 E Sbjct: 455 GE 456 >gi|152980305|ref|YP_001353164.1| NADH dehydrogenase I chain M [Janthinobacterium sp. Marseille] Length = 496 Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 31/299 (10%) Query: 206 DRTALVFGIVFVVAGLAFKLGAVPFHMWVPDVYQGSPTPVTLLLGAAP-KLAAFAII-FR 263 D L+F + F++A A K+ P H W+PD + +PT +++L A KL A+ + F Sbjct: 209 DAQILIF-LAFLMA-FAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFS 266 Query: 264 LLVEGMLPLAEQWQQMLMV-LAVLSIILGNVTAIAQTNIKRMLAYSTISHMGFMLLGMMS 322 L + P A + M+ L+++++I + A+ QT++K+++AYS+I+HMGF+ LG Sbjct: 267 LPIT---PDASHYLSGFMITLSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFF- 322 Query: 323 GVIDSNLFSAVNAYSSSLFYAITYVITTLGSFGVI-ILLSRSGFEADTLDDFKGLNQRSP 381 +F+ + A + I++ + F I +L R + D+ G+ P Sbjct: 323 ------MFNDM-AVQGGIVQMISHGFVSGAMFLCIGVLYDR--MHTRNIADYGGVVNVMP 373 Query: 382 WFAAVMMIMMFSLAGIPPLVGFYAKLSVLQAAMATGQLWLPVLAVIFSLIGAFYYIRVVK 441 FAA ++ AG+P GF + V+ A+ W+ +LA ++GA Y + + K Sbjct: 374 KFAAFFVLFSMGNAGLPATSGFVGEFMVILGAVKF-NFWIGLLAATALILGAAYSLWLAK 432 Query: 442 VMYFDEPTDTSKIVATPEMR-------VVLSFNGIAAVALGLWPGHLMDACTNAIVTTL 493 + F T+ EM+ ++L IA +A+GL+P DA ++ L Sbjct: 433 RVIFGAITNHH----VSEMKDLNKREFLMLGLLAIAVLAMGLYPAPFTDAMQTSVTDLL 487 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,092,764 Number of extensions: 45528 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 188 Number of HSP's successfully gapped: 5 Length of query: 502 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 415 Effective length of database: 899,382 Effective search space: 373243530 Effective search space used: 373243530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)