BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1638.p (496 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980305|ref|YP_001353164.1| NADH dehydrogenase I chain M [J... 770 0.0 gi|152981941|ref|YP_001354946.1| putative monovalent cation/H+ a... 83 5e-17 gi|152980500|ref|YP_001353163.1| NADH dehydrogenase I chain L [J... 76 4e-15 gi|152980285|ref|YP_001353165.1| NADH dehydrogenase I chain N [J... 72 1e-13 >gi|152980305|ref|YP_001353164.1| NADH dehydrogenase I chain M [Janthinobacterium sp. Marseille] Length = 496 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/496 (77%), Positives = 436/496 (87%) Query: 1 MMQSTFPILSLAIWVPIVFGILVLALGRDSNPGLARWLALFGSLVGLVVTFPLIQHFDPL 60 MMQSTFP+LSLAIW+PI FG+ +LA+GRD+NP R L+LFGS+V +VT P++ FD Sbjct: 1 MMQSTFPLLSLAIWLPIAFGVFILAVGRDTNPNAVRVLSLFGSIVSFLVTLPIVAKFDNA 60 Query: 61 AHGYQFVEKTPWIDRFNISYFLGLDGISLWFVPLTAFITVIVVLAGWVVIQKRVAQYMGA 120 AHG QFVEK WID FNI+Y LG+DG+S+WFV LTAFIT+ VV+A W VI+KRVAQYMGA Sbjct: 61 AHGMQFVEKMKWIDIFNINYSLGVDGLSMWFVILTAFITIFVVIAAWEVIEKRVAQYMGA 120 Query: 121 FLILSGIMVGVFSALDAMLFYAFFEATLIPMFIIVGVWGGDNRVYAAFKLFLYTLLGSLL 180 FLILSG+M+GVF ALD +LFY FFE+TLIPMFII+GVWGG NRVYA+ K FLYT GSLL Sbjct: 121 FLILSGLMIGVFCALDGLLFYVFFESTLIPMFIIIGVWGGANRVYASIKFFLYTFFGSLL 180 Query: 181 MLIALIYLYYVSGGSFEIPVWHQVPLSMLEQKILFFAFLAAFAVKVPMWPVHTWLPDAHV 240 ML+AL+YLY+ SG SF+I WH +PL M Q ++F AFL AFAVKVPMWPVHTWLPDAHV Sbjct: 181 MLVALLYLYFKSGHSFDILAWHTLPLPMDAQILIFLAFLMAFAVKVPMWPVHTWLPDAHV 240 Query: 241 QAPTGGSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIFLSLVAVIYIGLVALVQQ 300 +APTGGS+VLAAIMLKLGAYGFLRFSLPI PDASH LSGFMI LSL+AVIYIGLVALVQ Sbjct: 241 EAPTGGSVVLAAIMLKLGAYGFLRFSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQT 300 Query: 301 DMKKLVAYSSIAHMGFVTLGFFMFNDMALQGGIVQMISHGFVSGAMFMCIGVLYDQMHTR 360 DMKKLVAYSSIAHMGFVTLGFFMFNDMA+QGGIVQMISHGFVSGAMF+CIGVLYD+MHTR Sbjct: 301 DMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVSGAMFLCIGVLYDRMHTR 360 Query: 361 EIAQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKFNFWIGLLAATAL 420 IA YGGVVN MP+FA FF+LFS+ N GLPATSGFVGEFMVILGAVKFNFWIGLLAATAL Sbjct: 361 NIADYGGVVNVMPKFAAFFVLFSMGNAGLPATSGFVGEFMVILGAVKFNFWIGLLAATAL 420 Query: 421 IWGAAYSLWLAKRVIFGAVANHHVAELVDLNAREFLILGLLAIATLVMGIYPGIITDSIQ 480 I GAAYSLWLAKRVIFGA+ NHHV+E+ DLN REFL+LGLLAIA L MG+YP TD++Q Sbjct: 421 ILGAAYSLWLAKRVIFGAITNHHVSEMKDLNKREFLMLGLLAIAVLAMGLYPAPFTDAMQ 480 Query: 481 TSVTDLLQHVAVSKIN 496 TSVTDLL+HVA+SK+N Sbjct: 481 TSVTDLLKHVAISKLN 496 >gi|152981941|ref|YP_001354946.1| putative monovalent cation/H+ antiporter subunit A [Janthinobacterium sp. Marseille] Length = 974 Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 124/486 (25%), Positives = 223/486 (45%), Gaps = 73/486 (15%) Query: 25 ALGRDSNPGLARWLALFGSLVGLVVTFPLIQHFDPLAHGYQFVE-------KTPWIDRFN 77 A R+ LA +AL+G LV A+ YQ+V + W+ Sbjct: 28 ADARNRESLLAGGVALYGLLVS--------------AYLYQYVGAGEIVRYQAAWLPLQG 73 Query: 78 ISYFLGLDGISLWFVPLTAFITVIVVLAG--WVVIQKRVAQYMGAFLILSGIMVGVFSAL 135 +++ L +DG++ FV L + ++VVL ++ + V ++ L G M+GV + Sbjct: 74 VNFALRMDGLAWLFVMLVLGVGLLVVLYARYYMSPEDPVPRFFAFLLAFMGSMLGVVLSG 133 Query: 136 DAMLFYAFFEATLIPMFIIVGVWGGDNRVYA---AFKLFLYTLLGSLLMLIALIYLYYVS 192 + + F+E T + F+++G W +R+ A A F T G L +L ++ + ++ Sbjct: 134 NLIQLVVFWELTSLTSFLLIGYW--HHRIDARRGARMAFTVTAAGGLCLLCGVLIIGHIV 191 Query: 193 GGSFEIPVWHQVPLSMLEQKILFFAFLAAFAV-------KVPMWPVHTWLPDAHVQAPTG 245 G S+++ + L+ ++ +LAA + K +P H WLP A + APT Sbjct: 192 G-SYDM----DIVLAAGDKIRAHDWYLAALVLVALGALTKSAQFPFHFWLPHA-MAAPTP 245 Query: 246 GSIVL-AAIMLKLGAYGFLRFSLPILPDASHALSG-----FMIFLSLVAVIYIG-LVALV 298 S L +A M+K G + +RF ALSG ++I + V + +G +A+ Sbjct: 246 VSSYLHSATMVKAGVFLLIRFW--------PALSGTEEWTWLIAGAGVCTLLLGSFIAIF 297 Query: 299 QQDMKKLVAYSSIAHMGFVTLGFFMFNDMALQGGIVQMISHGFVSGAMFMCIGVLYDQMH 358 Q D+K L+AYS+I+H+G +T+ + + + + I ++H ++FM G++ + Sbjct: 298 QHDLKGLLAYSTISHLGLITVLLGIGSPLGVVAAIFHTLNHAIFKASLFMAAGIIDHETG 357 Query: 359 TREIAQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVILGAVKF----NFWIGL 414 TR++ G+ + +P A I+ S + G+P +GF+ + M + N+W+ Sbjct: 358 TRDMRVLRGLRHAIPITATLAIVASASMAGVPLLNGFLSKEMFFAETLHVGGTENWWMSY 417 Query: 415 LAATALIWGAAYSLWLAKRVIFGAVAN------HHVAELVDLNAREFLILGLLAIATLVM 468 A I+ AYSL V FG + H + EFL+L L++ Sbjct: 418 AAVAMGIFSVAYSLRFIS-VFFGQLPKDLPKTPHEPPRWMRFPV-EFLVL-----LCLIV 470 Query: 469 GIYPGI 474 GI PG+ Sbjct: 471 GIVPGL 476 >gi|152980500|ref|YP_001353163.1| NADH dehydrogenase I chain L [Janthinobacterium sp. Marseille] Length = 699 Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 225 KVPMWPVHTWLPDAHVQAPTG-GSIVLAAIMLKLGAYGFLRFSLPILPDASHALSGFMIF 283 K +P+H WLPD+ ++ PT +++ AA M+ G + R S P+ + ALS F++ Sbjct: 243 KSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVARMS-PLFELSDTALS-FVLI 299 Query: 284 LSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFMFNDMALQGGIVQMISHGFVS 343 + + +++G + ++Q D+K++VAYS+++ +G++T+ A + +++H F Sbjct: 300 IGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVFHLMTHAFFK 356 Query: 344 GAMFMCIG-VLYDQMHTREIAQYGGVVNKMPRFAFFFILFSLANCGLPATSGFVGEFMVI 402 +F+ G V+ H ++I GG+ MP +L SLA G P SGF + +I Sbjct: 357 ALLFLAAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSII 416 >gi|152980285|ref|YP_001353165.1| NADH dehydrogenase I chain N [Janthinobacterium sp. Marseille] Length = 494 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 36/324 (11%) Query: 166 AAFKLFLYTLLGSLLMLIALIYLYYVSGGSFEIPVWHQVPLSMLEQKILFFAFL---AAF 222 AA K F+ L S +L + LY +G V + + IL F + + Sbjct: 161 AAMKYFILGALASGFLLYGISMLYGATGSLDLTEVARATAAGTVNKPILIFGLVFLVSGL 220 Query: 223 AVKVPMWPVHTWLPDAHVQAPTGGSIVLAAIMLKLGAYGF-LRFSLPILPDASHALSGFM 281 A K+ + P H W+PD + APT +++L KL A+ +R + LP + + Sbjct: 221 AFKLGVVPFHMWVPDVYQGAPTSVTLLLGGAP-KLAAFAITIRLLVEGLPALAVDWQQML 279 Query: 282 IFLSLVAVIYIGLVALVQQDMKKLVAYSSIAHMGFVTLGFFMFNDMALQGGIVQMISHGF 341 L+++++ + A+VQ ++K+++AYS+I+ MGF+ LG + G ++G+ Sbjct: 280 TILAVLSMAIGNVTAIVQTNIKRMLAYSTISQMGFILLGLLSGVVVGADGST----TNGY 335 Query: 342 VSGAMFMCIGVLYDQM--------------HTREIAQYGGVVNKMPRFAF--FFILFSLA 385 S AMF I + + I + G+ + P FA ++FSLA Sbjct: 336 -SAAMFYSITYVLTTLGIFGVIMLLSRAGFEADNIDDFKGLNQRSPWFALVTLMLMFSLA 394 Query: 386 NCGLPATSGFVGEFMVILGAVKF-NFWIGLLAATALIWGAAYSLWLAKRVIFGA------ 438 G+P GF + V+ + W+ ++A + GA Y L + K + F Sbjct: 395 --GVPPVVGFYAKLSVLQAVLSTGQIWLAIVAVLFSLIGAYYYLRIVKVMYFDEPLDNSK 452 Query: 439 -VANHHVAELVDLNAREFLILGLL 461 V + V + +N L+LGL+ Sbjct: 453 IVVSKDVTVALSVNGASLLVLGLV 476 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.333 0.145 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,161,763 Number of extensions: 49720 Number of successful extensions: 258 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 6 Length of query: 496 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 409 Effective length of database: 899,382 Effective search space: 367847238 Effective search space used: 367847238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 131 (55.1 bits)