BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1637.p (696 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980500|ref|YP_001353163.1| NADH dehydrogenase I chain L [J... 1078 0.0 gi|152981941|ref|YP_001354946.1| putative monovalent cation/H+ a... 193 3e-50 gi|152980285|ref|YP_001353165.1| NADH dehydrogenase I chain N [J... 90 6e-19 gi|152980305|ref|YP_001353164.1| NADH dehydrogenase I chain M [J... 69 7e-13 >gi|152980500|ref|YP_001353163.1| NADH dehydrogenase I chain L [Janthinobacterium sp. Marseille] Length = 699 Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/699 (80%), Positives = 611/699 (87%), Gaps = 3/699 (0%) Query: 1 MAGQLNPHLLLAVPLAPLAGSAIAGLLGTKFFGNVVGRKVSHTATILGVLIAAIISIQTL 60 MAGQLNPHLLL VPLAPLAGS IAGL GTKFFGN++GRK SHT TILGVLI+ I+S+ TL Sbjct: 1 MAGQLNPHLLLIVPLAPLAGSMIAGLFGTKFFGNLIGRKTSHTVTILGVLISFILSLHTL 60 Query: 61 LAVLDGATYNGTLYNWMTVAGIKLEIGFMVDSLTAMMMCVVTFVSLMVHIYTIGYMAEDE 120 V+DGAT+NG LY WMTV G+KLE+GF+VDSLTAMMMCVVTFVSLMVHIYTIGYM EDE Sbjct: 61 SLVMDGATFNGNLYTWMTVVGLKLEVGFLVDSLTAMMMCVVTFVSLMVHIYTIGYMEEDE 120 Query: 121 GYNRFFSYISLFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAF 180 GYNRFFSYISLFTF+MLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYT+PTAI ANMKAF Sbjct: 121 GYNRFFSYISLFTFAMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTKPTAIVANMKAF 180 Query: 181 LVNRVGDFGFILGIGLLLAYAGSMNYSEVFAKRAELVQLTLPGTDWMLLTVACICLFVGA 240 LVNRVGDFGFILGIGLLLAYAGSM+Y+EVFAK+ +L LTLPGTDWMLLTVACICLF+GA Sbjct: 181 LVNRVGDFGFILGIGLLLAYAGSMDYAEVFAKKEQLATLTLPGTDWMLLTVACICLFIGA 240 Query: 241 MGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFILVI 300 MGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMV RMSPLFELSDTALSF+L+I Sbjct: 241 MGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFVLII 300 Query: 301 GAITALFMGFLGTMQNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLF 360 G+ITALFMGFLG +QNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLF Sbjct: 301 GSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLF 360 Query: 361 LGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSIIEAAA 420 L AGSVIIGMHHDQD+RNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSIIEA Sbjct: 361 LAAGSVIIGMHHDQDIRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSIIEAVH 420 Query: 421 ESHLPGSGFAYFAVLASVFVTAFYSFRMYFMVFHGKERFGQA--PAHDDHHAPAAAHGVH 478 + L GSGFA FAVLA VFVTAFYSFRMYF+VFHG+ERFG+ D HA AA Sbjct: 421 ATTLFGSGFANFAVLAGVFVTAFYSFRMYFLVFHGEERFGKEHAHHDDHAHAKAAHAHDD 480 Query: 479 DDHGHDAHDDHGHDEHHHGLAPGQKPHESPLVVTLPLILLAIPSVIIGFFAISPMLYGDF 538 H DD + HHGLAPGQKPHESPLVVTLPLILLAIPSV+IGFFAI PML+GDF Sbjct: 481 HAHDAHHADDDHGHDEHHGLAPGQKPHESPLVVTLPLILLAIPSVLIGFFAIQPMLHGDF 540 Query: 539 FKGVIFFGENHKVMEELSHEYHGPLAMVLHAFTTAPLWLAIAGVVVAYYCYMINPRVPAW 598 F GVI E+H M EL +HG +AM +H +TAP WLA+AGVV AYYCYMINPRVPAW Sbjct: 541 FNGVITVSESHGAMAELKEHFHGAVAMAIHGLSTAPFWLAVAGVVSAYYCYMINPRVPAW 600 Query: 599 FKEKFSIIYTILDNKYYMDKFNEVVFAGGARLLGNGLSIVGDRGIIDGLFVNGSAKVVGW 658 F + F ++T+L+NKYYMDKFNEVV AGGARLLG GLS VGD+ +IDGL VNGSAKVV W Sbjct: 601 FYKHFHALHTLLENKYYMDKFNEVVIAGGARLLGGGLSRVGDKTLIDGLIVNGSAKVVAW 660 Query: 659 FSKFTRLWQSGYIYHYAFVMIIGVLGFLVWFMPFP-FAK 696 S+ R+ QSGYIYHYAFVMI+G+LG L +F+ FP FAK Sbjct: 661 SSRVIRVLQSGYIYHYAFVMILGMLGLLSYFVIFPLFAK 699 >gi|152981941|ref|YP_001354946.1| putative monovalent cation/H+ antiporter subunit A [Janthinobacterium sp. Marseille] Length = 974 Score = 193 bits (490), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 141/405 (34%), Positives = 211/405 (52%), Gaps = 28/405 (6%) Query: 76 WMTVAGIKLEIGFMVDSLTAMMMCVVTFVSLMVHIYTIGYMAEDEGYNRFFSYISLFTFS 135 W+ + G+ + +D L + + +V V L+V +Y YM+ ++ RFF+++ F S Sbjct: 68 WLPLQGVNFAL--RMDGLAWLFVMLVLGVGLLVVLYARYYMSPEDPVPRFFAFLLAFMGS 125 Query: 136 MLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGFILGIG 195 ML +V+S N +QL WE L S+LLIG+W+ R A + AF V G + G+ Sbjct: 126 MLGVVLSGNLIQLVVFWELTSLTSFLLIGYWHHRIDARRGARMAFTVTAAGGLCLLCGVL 185 Query: 196 LLLAYAGSMNYSEVFAKRAELVQLTLPGTDWMLLTVACICLFVGAMGKSAQFPLHVWLPD 255 ++ GS + V A ++ DW L + + L GA+ KSAQFP H WLP Sbjct: 186 IIGHIVGSYDMDIVLAAGDKI-----RAHDWYLAALVLVAL--GALTKSAQFPFHFWLPH 238 Query: 256 SMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFILVIGAITALFMGFLGTMQ 315 +M PTP+S+ +H+ATMV AG+F++ R P ++ I G T L F+ Q Sbjct: 239 AMAAPTPVSSYLHSATMVKAGVFLLIRFWPALSGTEEWTWLIAGAGVCTLLLGSFIAIFQ 298 Query: 316 NDIKRVVAYSTLSQLGYMTVALGASA---YSVAVFHLMTHAFFKALLFLGAGSVIIGMHH 372 +D+K ++AYST+S LG +TV LG + A+FH + HA FKA LF+ AG +I Sbjct: 299 HDLKGLLAYSTISHLGLITVLLGIGSPLGVVAAIFHTLNHAIFKASLFMAAG-IIDHETG 357 Query: 373 DQDMRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSIIEAAAESHLPGSG---F 429 +DMR + GLR +PIT +++ S ++ G P +GF SK+ A H+ G+ Sbjct: 358 TRDMRVLRGLRHAIPITATLAIVASASMAGVPLLNGFLSKEMFF--AETLHVGGTENWWM 415 Query: 430 AYFAVLASVFVTAFYSFRMYFMVFHGKERFGQAPA---HDDHHAP 471 +Y AV +F A YS R + VF FGQ P H P Sbjct: 416 SYAAVAMGIFSVA-YSLR-FISVF-----FGQLPKDLPKTPHEPP 453 >gi|152980285|ref|YP_001353165.1| NADH dehydrogenase I chain N [Janthinobacterium sp. Marseille] Length = 494 Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 126/478 (26%), Positives = 229/478 (47%), Gaps = 78/478 (16%) Query: 7 PHLLLAVPLAPLAGSAIAGLLGTKFFGNVVGRKVSHTATILGVLIAAIISIQTLLAVLDG 66 P + LA+ AI +L F R +++ +I+ +L+ ++S+ Sbjct: 11 PEIFLAI--------AICAILLIDLFLKDEKRHITYVLSIIALLVCGVLSLSDF------ 56 Query: 67 ATYNGTLYNWMTVAGIKLEIGFMVDSLTAMM-MCVVTFVSLMVHIYTIGYMAEDEGYN-R 124 T+Y + + F+ D +++++ +C V L + +Y+ Y + E N R Sbjct: 57 -NTGATVYTFNNM--------FVSDPMSSLLKICSYVAVGLTL-VYSRQYGLDREMVNGR 106 Query: 125 F---FSYISLFTF-SMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAF 180 F ++LF+ ++++ +NNFL ++ G E + L Y L+ + +A MK F Sbjct: 107 LGGEFYLLALFSLLGQMVMISANNFLIIYLGLELMSLSLYALVAMRRDHAISTEAAMKYF 166 Query: 181 LVNRVGDFGFIL-GIGLLLAYAGSMNYSEVFAKRAELVQLTLPGT-DWMLLTVACICLFV 238 ++ + GF+L GI +L GS++ +EV RA T GT + +L + L Sbjct: 167 ILGALAS-GFLLYGISMLYGATGSLDLTEV--ARA-----TAAGTVNKPILIFGLVFLVS 218 Query: 239 GAMGKSAQFPLHVWLPDSMEG-PTPISALIHAATMVTAGIFMVTRMSPLFELSDTALSF- 296 G K P H+W+PD +G PT ++ L+ A + A F +T + L A+ + Sbjct: 219 GLAFKLGVVPFHMWVPDVYQGAPTSVTLLLGGAPKLAA--FAITIRLLVEGLPALAVDWQ 276 Query: 297 -ILVIGAITALFMGFL-GTMQNDIKRVVAYSTLSQLGYMT------VALGA-----SAYS 343 +L I A+ ++ +G + +Q +IKR++AYST+SQ+G++ V +GA + YS Sbjct: 277 QMLTILAVLSMAIGNVTAIVQTNIKRMLAYSTISQMGFILLGLLSGVVVGADGSTTNGYS 336 Query: 344 VAVFHLMTHAFFKALLFLGAGSVII-----GMHHDQDMRNMGGLRKYMPITWITSLLGSL 398 A+F+ +T+ L LG VI+ G D ++ + GL + P + +L+ Sbjct: 337 AAMFYSITY----VLTTLGIFGVIMLLSRAGFEAD-NIDDFKGLNQRSPWFALVTLMLMF 391 Query: 399 ALIGTPFFSGFYSKDSIIEAAAESHLPGSGFAYFAVLASVF--VTAFYSFR----MYF 450 +L G P GFY+K S+++A +G + A++A +F + A+Y R MYF Sbjct: 392 SLAGVPPVVGFYAKLSVLQAVLS-----TGQIWLAIVAVLFSLIGAYYYLRIVKVMYF 444 >gi|152980305|ref|YP_001353164.1| NADH dehydrogenase I chain M [Janthinobacterium sp. Marseille] Length = 496 Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 97/185 (52%), Gaps = 8/185 (4%) Query: 243 KSAQFPLHVWLPDS-MEGPTPISALIHAATMVTAGIFMVTRMS-PLFELSDTALS-FILV 299 K +P+H WLPD+ +E PT +++ AA M+ G + R S P+ + LS F++ Sbjct: 225 KVPMWPVHTWLPDAHVEAPTG-GSVVLAAIMLKLGAYGFLRFSLPITPDASHYLSGFMIT 283 Query: 300 IGAITALFMGFLGTMQNDIKRVVAYSTLSQLGYMTVA---LGASAYSVAVFHLMTHAFFK 356 + I +++G + +Q D+K++VAYS+++ +G++T+ A + +++H F Sbjct: 284 LSLIAVIYIGLVALVQTDMKKLVAYSSIAHMGFVTLGFFMFNDMAVQGGIVQMISHGFVS 343 Query: 357 ALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSII 416 +FL G V+ H +++ + GG+ MP +L S+ G P SGF + +I Sbjct: 344 GAMFLCIG-VLYDRMHTRNIADYGGVVNVMPKFAAFFVLFSMGNAGLPATSGFVGEFMVI 402 Query: 417 EAAAE 421 A + Sbjct: 403 LGAVK 407 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,492,458 Number of extensions: 60580 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 5 Length of query: 696 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 606 Effective length of database: 888,291 Effective search space: 538304346 Effective search space used: 538304346 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 133 (55.8 bits)