BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1633.p
         (356 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980251|ref|YP_001353159.1| NADH dehydrogenase I chain H [J...   531   e-152

>gi|152980251|ref|YP_001353159.1| NADH dehydrogenase I chain H
           [Janthinobacterium sp. Marseille]
          Length = 357

 Score =  531 bits (1368), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/358 (71%), Positives = 306/358 (85%), Gaps = 3/358 (0%)

Query: 1   MDHLIAQINNVGPALLGPTLFTLVWTLVKILVVMVPLLVCVAYMTYWERKLIGWMHVRLG 60
           MD L A I+  G +LLG   + LVW LVKI+ V+ PL+  VAY+T WERK+IGWMHVR G
Sbjct: 1   MDQLFASIHATGQSLLG-YYWPLVWNLVKIIAVVAPLMGAVAYLTLWERKVIGWMHVRHG 59

Query: 61  PNRVGPAGLLQPIADAVKLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSPEHV 120
           PNR GPAGLLQPIAD VKL+ KEI  P+K++KALF +AP+MTIMPALAAWAV+PF PE V
Sbjct: 60  PNRTGPAGLLQPIADGVKLLLKEIVVPAKSSKALFVIAPIMTIMPALAAWAVIPFGPETV 119

Query: 121 LANVNAGLLYLMAITSMEVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLVVVL 180
           LA+VNAGLL++MAITS+EVYG+I+AGWASNSKYAFLGAMRASAQM+SYEI+MGF LV++L
Sbjct: 120 LADVNAGLLFVMAITSLEVYGVIVAGWASNSKYAFLGAMRASAQMISYEIAMGFVLVIIL 179

Query: 181 MVTGSLNMTDIVMAQTKGQFAGMGLNFLSWNWLPLLPVFVIYFVSGVAETNRHPFDVVEG 240
           MVTGS+N+T IV  Q  G+FA MGL FLSWNWLPLLP+F IY +SG AE NRHPFDVVEG
Sbjct: 180 MVTGSMNLTTIVNTQNTGRFAEMGLTFLSWNWLPLLPMFFIYIISGTAELNRHPFDVVEG 239

Query: 241 ESEIVAGHMIEYSGMSFAMFFLAEYAAMILISILTALLFFGGWSAP--LAALDFIPGWIW 298
           ESEIVAGHM+EYSGMSFAMFFLAEYA M LISI+  L+F GGW++P  +A   ++PGWIW
Sbjct: 240 ESEIVAGHMVEYSGMSFAMFFLAEYANMWLISIMATLMFLGGWTSPIDMAPFTWVPGWIW 299

Query: 299 LGLKTFFFLSLYVWIRASFPRYRYDQIMRLGWKVFIPLTLVWLVVVAIWIQSPWNIWK 356
           LGLKT   +++++W RASFPRYRYDQIMRLGWKVFIPLTLV+L++VAIW+++PWNIW 
Sbjct: 300 LGLKTLMVVTMFIWFRASFPRYRYDQIMRLGWKVFIPLTLVYLLIVAIWMKTPWNIWN 357


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.141    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 869,028
Number of extensions: 36124
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 272
Effective length of database: 910,473
Effective search space: 247648656
Effective search space used: 247648656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)