BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1632.p (772 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980756|ref|YP_001353158.1| NADH dehydrogenase I chain G [J... 1263 0.0 gi|152981248|ref|YP_001355342.1| NAD-dependent formate dehydroge... 220 2e-58 gi|152981034|ref|YP_001352093.1| formate dehydrogenase alpha sub... 181 2e-46 >gi|152980756|ref|YP_001353158.1| NADH dehydrogenase I chain G [Janthinobacterium sp. Marseille] Length = 779 Score = 1263 bits (3267), Expect = 0.0, Method: Compositional matrix adjust. Identities = 617/779 (79%), Positives = 669/779 (85%), Gaps = 7/779 (0%) Query: 1 MVEIEIDGKKVEVQEGSMVMDAANKIGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLP 60 MVEIEIDGKKVEVQEGSMVMDAANK+GTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLP Sbjct: 1 MVEIEIDGKKVEVQEGSMVMDAANKLGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLP 60 Query: 61 ACATPVNNGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLAVGYGGST 120 ACATPV GMIVR+ S+KAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLAVGYG S+ Sbjct: 61 ACATPVMPGMIVRSNSEKAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLAVGYGDSS 120 Query: 121 SRYEEEKRVVEPKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMELGMLGRGEHSEITTF 180 SRYEEEKRVV PKDVGPLISMKEM+RCIHCTRCVRFGQEVAGVME GMLGRGEH+EIT+F Sbjct: 121 SRYEEEKRVVAPKDVGPLISMKEMSRCIHCTRCVRFGQEVAGVMEFGMLGRGEHAEITSF 180 Query: 181 VGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSVGANLIVQVKNGK 240 VGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDS+GANLIVQVK GK Sbjct: 181 VGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSLGANLIVQVKAGK 240 Query: 241 VMRVLPFENEEVNECWISDKDRFAYEALNSAERLTKPMLKQDGKWQEVDWQTALEYVAHG 300 VMRVLP EN++VNECWISDKDRFAYE LNS +RLT PM+KQDGKWQE DWQTALEYVAHG Sbjct: 241 VMRVLPLENDDVNECWISDKDRFAYEGLNSEDRLTSPMIKQDGKWQETDWQTALEYVAHG 300 Query: 301 LRNIRHEHGADAIAALGTPYSTLEELNLLQKVVRGVGSENVDFRLRQSDFALDGQIKPWL 360 LRNI+HEHGADAIAAL TPYSTLEEL+LLQK+VRG+GSEN+DFRLRQSDF+LD + PWL Sbjct: 301 LRNIKHEHGADAIAALATPYSTLEELSLLQKLVRGIGSENIDFRLRQSDFSLDTGVTPWL 360 Query: 361 GMSIVEFSQLNRVFVIGSFLRKDHPLLSARLRQSAKSGAKVSVLHATDDDLLMPIANKII 420 GMSI EF L R FVIGSFLRKDHPLL+ARLRQ+ K GA VS+LHA+DDDLLMP+ANK+I Sbjct: 361 GMSIAEFGALKRAFVIGSFLRKDHPLLAARLRQAVKQGASVSILHASDDDLLMPVANKMI 420 Query: 421 AAPSAWLSALAEVAVAVAQAKGIAAPAAYAGVAASEAAKATAASLLSGDAKGVFLGNAAV 480 APS WLSAL EV AVAQAKGI+APA + + S AK AASLLSG+ K V LGNA + Sbjct: 421 KAPSDWLSALGEVVAAVAQAKGISAPAGFDAIQPSAEAKQIAASLLSGEPKAVLLGNAVL 480 Query: 481 QHPQAAQLHVAAQWIAEQTGAKLGVLTEGGNAVGAYLANAVP--APGKAAAVFAQPRKAY 538 QHPQAA+LH AAQWIA+ T AK G LTE N+VG YL NAVP AA FAQPRKAY Sbjct: 481 QHPQAAKLHAAAQWIAQNTEAKFGFLTEAANSVGGYLVNAVPGANGANAAQAFAQPRKAY 540 Query: 539 LLLNAEPELDSYDPQAARAALNQADMVVVMSAFQHGADYADVLLPIAPFTETSGTFVNAE 598 +LLNAEPELDS++PQ ARAALNQA+MVVVMS ++HG D+ADVLLPIAPF+ETSGTFVN E Sbjct: 541 VLLNAEPELDSFNPQVARAALNQAEMVVVMSPYKHGNDFADVLLPIAPFSETSGTFVNGE 600 Query: 599 GRAQSFNGTVKPAGDARPGWKVLRVLGNLLELENFDYETSESIRDELLG----KEVDLSA 654 GRAQSFNGTVKP GD RP WKVLRVLGNLLEL FDY+TSE+IR+E++G E +L Sbjct: 601 GRAQSFNGTVKPLGDTRPAWKVLRVLGNLLELSGFDYDTSEAIRNEIIGASAPAEANLLP 660 Query: 655 RLNNTAAQQAQTVTAVAG-SLERVADVPIYFADAIARRSPPLLETRDGQAPKAWLSAALA 713 RLNN Q A AG LERV DV IY DAI RRS PL +T DG APKAWLSA LA Sbjct: 661 RLNNFGKAAPQAEVAAAGLQLERVTDVSIYATDAIVRRSQPLQQTNDGAAPKAWLSADLA 720 Query: 714 AQLGVAEGDQVTVKQGSGSAALTAAIDKKLPENVVRVAAAHASTAALGGMFGAIVVEKA 772 A+LG+A GDQV V QG+GSA L AAID KLP NVVRVAA H STA LG MFG+I VEKA Sbjct: 721 AKLGIAAGDQVKVTQGTGSAVLAAAIDAKLPVNVVRVAAGHQSTAGLGAMFGSISVEKA 779 >gi|152981248|ref|YP_001355342.1| NAD-dependent formate dehydrogenase alpha subunit [Janthinobacterium sp. Marseille] Length = 957 Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 202/729 (27%), Positives = 315/729 (43%), Gaps = 88/729 (12%) Query: 1 MVEIEIDGKKVEVQEGSMVMDAANKIGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLP 60 M+ +EIDG + V +G+ VM AA + G +P C L +CR+CLVE+E Sbjct: 19 MISLEIDGVAITVPQGTSVMRAAAEYGINVPKLCATDSLESFGSCRLCLVEIEGRRGYPA 78 Query: 61 ACATPVNNGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLA--VGYGG 118 +C TP GM V+T + K ++GVME + +HPLDC C G C+LQD+A VG Sbjct: 79 SCTTPAEAGMKVKTQTPKLADIRRGVMELYISDHPLDCLTCPTNGNCELQDMAGVVGLRD 138 Query: 119 STSRYEEEKRVVEPKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMELGMLGRGEHSEIT 178 Y+ E + KD + ++CI C RCVR +E G L + GRG S ++ Sbjct: 139 VRYGYDGENHLKLEKDESNPYFTYDASKCIVCNRCVRACEETQGTFALTIDGRGFTSRVS 198 Query: 179 TFVGKT-VDSEL--SGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSVGANLIVQ 235 + +DSE G +D CP LT K + E S+ + + + VG + + Sbjct: 199 AGQKEDFIDSECVSCGACVDACPTATLTEKTVIMMGQA-EHSKVTTCA-YCGVGCSFKAE 256 Query: 236 VKNGKVMRVLPFENEEVNECWISDKDRFAYEALNSAERLTKPMLKQD--GKWQEVDWQTA 293 +K +V+R++P + + N+ K RFA+ +R+ KPM++ W+EV W A Sbjct: 257 MKGNEVVRMVPNPDGKANQGHACVKGRFAWGYATHKDRMLKPMIRSKITDPWKEVSWDEA 316 Query: 294 LEYVAHGLRNIRHEHGADAIAALGTPYSTLEELNLLQKVVR-GVGSENVDFRLRQSDFAL 352 + Y A L+ I+ ++G D+I L + T EE L+QK+VR G+ NVD R Sbjct: 317 INYAASELKRIQAKYGKDSIGGLVSSRCTNEEGYLVQKLVRAAFGNNNVDTCARVCHSPT 376 Query: 353 DGQIKPWLGMS--IVEFSQLNR---VFVIGSFLRKDHPLLSARLRQSAKSGAKVSVLHAT 407 +K +G S F + + + VIG+ HP+ ++++++ + GAK+ V+ Sbjct: 377 GYGLKVTMGESAGTQTFESVMKSDVILVIGANPASGHPVFASQMKRRIRQGAKLIVVDPR 436 Query: 408 DDDL-------------LMPIANKIIAAPSA------------WLSALAEVAVAVAQAKG 442 ++ L P +N I A +++A EV A+ Sbjct: 437 TTEMVKSPHIQADYHLKLKPGSNVAIVNALAHVIITENLHKPDFIAARCEVDSFEEWAEF 496 Query: 443 IA----APAAYAGVAASEAAKATAASLL--SGDAKGVFLGNAAVQHPQAAQLHVAAQWIA 496 ++ +P A V+ AA A+ L +G ++ G +H Q + + +A Sbjct: 497 VSLPENSPEAMEEVSGVPAADIRGAARLFATGGNAAIYYGLGVTEHAQGSTTVIGIANLA 556 Query: 497 EQTG--AKLGV----LTEGGNAVGAYLANAVPA--PGKAAAVFAQPRKAY-----LLLNA 543 TG + GV L N G+ + P PG + R + L + Sbjct: 557 MATGNIGRDGVGVNPLRGQNNVQGSCDMGSFPHELPGYRHVSDSVARAEFEAVWGCTLES 616 Query: 544 EPELD------------------------SYDP--QAARAALNQADMVVVMSAF-QHGAD 576 EP L DP Q AAL + ++V F A Sbjct: 617 EPGLRIPNMFDAAMDGTFMGLYCEGEDIVQSDPNTQHVTAALEAMECIIVQDIFLNETAK 676 Query: 577 YADVLLPIAPFTETSGTFVNAEGRAQSFNGTVKPAGDARPGWKVLRVLGNLLELENFDYE 636 YA V LP + F E GTF NAE R V P W+V ++L N L +Y+ Sbjct: 677 YAHVFLPGSSFLEKDGTFTNAERRISRVR-KVMPPKSGYGDWEVTQMLSNALGYP-MNYK 734 Query: 637 TSESIRDEL 645 I DE+ Sbjct: 735 HPREIMDEI 743 >gi|152981034|ref|YP_001352093.1| formate dehydrogenase alpha subunit [Janthinobacterium sp. Marseille] Length = 946 Score = 181 bits (458), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 188/736 (25%), Positives = 308/736 (41%), Gaps = 103/736 (13%) Query: 2 VEIEIDGKKVEVQEGSMVMDAANKIGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLPA 61 V E++G++V + ++ A + G IPH C+ + + A NCR C+VE+ P+ Sbjct: 17 VTFELNGREVTGRATDTILTVAKREGIEIPHLCFKEGMDTAGNCRACVVEINGERVLAPS 76 Query: 62 CATPVNNGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLAVGYGGSTS 121 C NGM V T S++AVK+QK V+E L D P D ++ + A G Sbjct: 77 CCRNPTNGMKVNTESERAVKSQKLVLELL----QSDMPEADYTRHNEVDEWAAKMGVGKP 132 Query: 122 RYEEEKRVVEPKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMELGMLGRGEHSEITTFV 181 R+E +V P I++ ++ CI CTRCVR ++ +G+ RG+H++I + Sbjct: 133 RFEARAKVAYDYS-HPAIAVN-LDACIQCTRCVRACRDEQENDVIGLAFRGDHAKIVFDM 190 Query: 182 GKTVDSEL---SGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSVGANLIVQVKN 238 + + G + CP GAL P R A + SV P+ VG L +K+ Sbjct: 191 DDPMGASTCVACGECVQACPTGALM--PARDVALNVPDKQVDSVCPYCGVGCQLTYNIKD 248 Query: 239 GKVMRVLPFENEEVNECWISDKDRFAYEALNSAERLTKPMLKQDGK-------------- 284 K++ V + N + K R+ ++ N RLTKP++++ Sbjct: 249 NKILYV-EGRDGPANRERLCVKGRYGFDYANHPHRLTKPLIRRADAPKSGDFIMDPDRVM 307 Query: 285 --WQEVDWQTALEYVAHGLRNIRHEHGADAIAALGTPYSTLEELNLLQKVVR-GVGSENV 341 ++E W+ ALE IR HG ++A G+ + EE L QK+VR G GS NV Sbjct: 308 EVFREATWEEALEVAGGNFAKIRDTHGKKSLAGFGSAKGSNEEAYLFQKLVRTGFGSNNV 367 Query: 342 DFRLRQSDFA-----LDGQIKPWLGMSIVEFSQLNRVFVIGSFLRKDHPLLSARLRQSAK 396 D R + L+G + +++ ++ V +IG+ +HP+ + ++ + Sbjct: 368 DHCTRLCHASSVVALLEGIGSGAVSNPVMDVTKAEVVIIIGANPTVNHPVAATWIKNAVS 427 Query: 397 SGAKVSVLHATDDDLLMPIANKIIAAPS----AWLSALAEVAVA-------VAQAKGIA- 444 +G K+ V ++ IA++ + + A L+A+ V V +++ I Sbjct: 428 NGTKLIVCDPRRTEMSR-IAHRFMQFKADTDVAMLNAMMNVIVTEGLVDKEFIESRTIGY 486 Query: 445 ----------APAAYAGVAASEAAKATAASLLSGDAKG--VFLGNAAVQHPQA---AQLH 489 P A + +A + L +KG + G QH A+ Sbjct: 487 EELRKNVEGYTPELMAPICGIDAETLRYVARLYATSKGSMILWGMGVSQHIHGTDNARCL 546 Query: 490 VAAQWIAEQT---GAKLGVLTEGGNAVGAYLANAVP---------APGKAAAVFAQPRKA 537 +A + Q G L L N GA A +P + K A FA+ Sbjct: 547 IALALMTGQIGRPGTGLHPLRGQNNVQGASDAGLIPMVYPDYQSVSDPKIRANFAKAWNM 606 Query: 538 YL-LLNAEPELDSY------------------------DPQA--ARAALNQADMVVVMSA 570 + LL+ EP L DP A AR AL D +VV Sbjct: 607 SVDLLDPEPGLTVVEIMHAITDGKIRGLYVQGENPAMSDPDANHAREALAALDHLVVQDI 666 Query: 571 FQHGADY-ADVLLPIAPFTETSGTFVNAEGRAQSFNGTVKPAGDARPGWKVLRVLGNLLE 629 F Y ADV+LP + F E +GTF N + Q + P G+A+ +++ + N L Sbjct: 667 FLTETAYLADVILPASAFPEKTGTFTNTDRTVQMGRQALNPPGEAKQDLWIIQQMANRLG 726 Query: 630 LENFDYETSESIRDEL 645 L+ + Y+ + DE+ Sbjct: 727 LD-WQYKHVSEVFDEM 741 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,558,980 Number of extensions: 59411 Number of successful extensions: 249 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 236 Number of HSP's successfully gapped: 4 Length of query: 772 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 681 Effective length of database: 884,594 Effective search space: 602408514 Effective search space used: 602408514 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)