BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1631.p (431 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980581|ref|YP_001353157.1| NADH dehydrogenase I chain F [J... 771 0.0 gi|152981173|ref|YP_001355343.1| NAD-dependent formate dehydroge... 286 1e-78 gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subu... 247 1e-66 >gi|152980581|ref|YP_001353157.1| NADH dehydrogenase I chain F [Janthinobacterium sp. Marseille] Length = 431 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/431 (83%), Positives = 401/431 (93%) Query: 1 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRG 60 MT LH+RHIKPLI A L G+NW LE+YVKRGGY SLKRIL+E +TPEQVIA++KAS LRG Sbjct: 1 MTSLHNRHIKPLIFAGLTGDNWGLEEYVKRGGYASLKRILSEGMTPEQVIAEVKASTLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFP+GLKWSFMP+ F GQKYLVCN+DEGEPGTFKDRDI+RYNPHS+IEGM I YA Sbjct: 61 RGGAGFPSGLKWSFMPKNFAGQKYLVCNSDEGEPGTFKDRDILRYNPHSVIEGMTIAAYA 120 Query: 121 MGITVGYNYIHGEIFAEYLRFEEALEEARAAGFLGDNILGTDFSFQLHAHHGYGAYICGE 180 MG++VGYNYIHGEIFAEY RFEEALE+ARAAGFLGDNILG+ SFQLHA HG+GAYICGE Sbjct: 121 MGVSVGYNYIHGEIFAEYDRFEEALEQARAAGFLGDNILGSTHSFQLHAFHGFGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP 240 ETALLESLEGKKGQPRFKPPFPAS+GLYGKPTTINNTETFAAVPFIF+VG +AYA +GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASYGLYGKPTTINNTETFAAVPFIFQVGAEAYAAIGKP 240 Query: 241 NNGGTKIFSVSGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKIKAVIPGGSSAPVIRGE 300 NNGGTKIFSVSGDVE PGNYEIPLGTPF+ LL+LAGG+RGGKK+KAVIPGGSS PV++G+ Sbjct: 241 NNGGTKIFSVSGDVENPGNYEIPLGTPFAELLKLAGGVRGGKKLKAVIPGGSSVPVVKGD 300 Query: 301 VMMDTTMDYDAIAKAGSMLGSGAVTVMDETRCMVKSLLRLSYFYHEESCGQCTPCREGTG 360 +MM T MDYD++AKAGSMLGSGAV VMDETRCMVK+LLRLSYFY+EESCGQCTPCREGTG Sbjct: 301 LMMATDMDYDSVAKAGSMLGSGAVIVMDETRCMVKALLRLSYFYYEESCGQCTPCREGTG 360 Query: 361 WMYRLVNRIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI 420 W+YR+V+RIENG G+ EDLD+LNSVADNIQGRTICALGDAAAMPVRA ++ FREEF YHI Sbjct: 361 WLYRMVHRIENGQGRPEDLDMLNSVADNIQGRTICALGDAAAMPVRAMIQQFREEFVYHI 420 Query: 421 EHKHCLVPAYI 431 EHKHCLVPAYI Sbjct: 421 EHKHCLVPAYI 431 >gi|152981173|ref|YP_001355343.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 518 Score = 286 bits (733), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 155/394 (39%), Positives = 222/394 (56%), Gaps = 4/394 (1%) Query: 24 LEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLKWSFMPRQFPGQK 83 LEDY+ GY LK+ + + P ++ ++ SGLRGRGGA FPTG+KW + QK Sbjct: 118 LEDYLAHDGYVGLKKAI--AMEPAAIVQEVTDSGLRGRGGAAFPTGIKWKTVLGAEAAQK 175 Query: 84 YLVCNTDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYAMGITVGYNYIHGEIFAEYLRFEE 143 Y+ CN DEG+ GTF DR ++ +P LIEGM I G A+ T GY Y+ E E Sbjct: 176 YIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVKATEGYIYVRSEYPHSIANLNE 235 Query: 144 ALEEARAAGFLGDNILGTDFSFQLHAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPA 203 A+ A AAG+LG+NILG+ +F L GAY+CGEETA+LES+EGK+G R KPP PA Sbjct: 236 AIVAANAAGYLGENILGSGRTFNLQVRKAAGAYVCGEETAMLESIEGKRGMVRAKPPLPA 295 Query: 204 SFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKPNNGGTKIFSVSGDVERPGNYEIP 263 GL+G+PT INN + +AVP I G + Y G + GT ++G+++ G E Sbjct: 296 LQGLFGQPTVINNVISLSAVPLILSRGAEFYKNYGMGRSRGTLPMQLAGNLKYGGLVEKA 355 Query: 264 LGTPFSTLL-ELAGGMRGGKKIKAVIPGGSSAPVIRGEVMMDTTMDYDAIAKAGSMLGSG 322 G LL + GG G+ I+AV GG + E + DT DY+A A S +G G Sbjct: 356 FGVTLRELLYDFGGGSESGRPIRAVQVGGPLGAYMP-ESLFDTPFDYEAFAAVASTVGHG 414 Query: 323 AVTVMDETRCMVKSLLRLSYFYHEESCGQCTPCREGTGWMYRLVNRIENGHGKMEDLDVL 382 + D+T M K +F EESCG+CTPCR G+ ++++I + + + +L Sbjct: 415 GLVAFDDTVDMAKQARYAMHFCAEESCGKCTPCRIGSTRGVEVMDKIIANQNRPQQIHLL 474 Query: 383 NSVADNIQGRTICALGDAAAMPVRAFVKNFREEF 416 + D + ++CA+G+ PV + + +F E+F Sbjct: 475 RDLCDVMVTGSLCAMGNMTPFPVLSALNHFPEDF 508 >gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 567 Score = 247 bits (631), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 144/391 (36%), Positives = 209/391 (53%), Gaps = 16/391 (4%) Query: 27 YVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLKWSFMPRQFPGQKYLV 86 Y GGY LK+ ++ + E VI ++ SGLRG GGAGFP+G KW + R G + + Sbjct: 191 YQNEGGYALLKKCVSGERDVESVIKTMEDSGLRGLGGAGFPSGRKWRIV-RGEKGPRLMA 249 Query: 87 CNTDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYAMGITVGYNYIHGEIFAEYLRFEEALE 146 N DEGEPGTFKDR + +PH +EGM+I +A+ I Y Y+ E E LE Sbjct: 250 VNIDEGEPGTFKDRVYLEKDPHRFLEGMLIAAWAVDIQTIYIYLRDEYHGCRTMLEAELE 309 Query: 147 EARAAGFLGDNILGTDFSFQLHAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFG 206 + +A + + ++ G GAYICGEE+A++ES+EGK+G PR +PP+ A G Sbjct: 310 KLKANPPIAN-------MPEIFLRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVG 362 Query: 207 LYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKPNNGGTKIFSVSGDVERPGNYEIPLGT 266 L+G+PT +N ET V I + G + + G+ G + +SVSG V+ PG P G Sbjct: 363 LFGRPTLEHNFETLYWVRDILEKGGEWFTSHGRNGRKGLRSYSVSGRVKNPGVKLAPAGI 422 Query: 267 PFSTLL-ELAGGMRGGKKIKAVIPGGSSAPVIRGEVMMDTTMDYDAIAKAGSMLGSGAVT 325 L+ E GGM G+ +PGG+S ++ M +D+D + G +GS AV Sbjct: 423 TIQELIDEHCGGMLEGQTFYGYLPGGASGGILPAS-MNAIPLDFDTLQPYGCFIGSAAVI 481 Query: 326 VMDETRCMVKSLLRLSYFYHEESCGQCTPCREGTGWMYRLVNRIENGHGKMEDLDVLNSV 385 V+ + V++ + F+ ESCGQCTPCR GT L+ + + G +EDL + Sbjct: 482 VLSDKDTAVQAARNMMDFFKHESCGQCTPCRVGTAKAAELIKKPKWDVGLLEDLSQV--- 538 Query: 386 ADNIQGRTICALGDAAAMPVRAFVKNFREEF 416 ++ +IC LG AA P+ VK F E Sbjct: 539 ---MRDSSICGLGQAAPNPIDCVVKYFPHEL 566 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,100,824 Number of extensions: 49682 Number of successful extensions: 110 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 3 Length of query: 431 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 345 Effective length of database: 903,079 Effective search space: 311562255 Effective search space used: 311562255 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)