BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1630.p
         (163 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980127|ref|YP_001353156.1| NADH dehydrogenase subunit E [J...   267   2e-73
gi|152981548|ref|YP_001355344.1| formate dehydrogenase, cytochro...    77   6e-16

>gi|152980127|ref|YP_001353156.1| NADH dehydrogenase subunit E
           [Janthinobacterium sp. Marseille]
          Length = 159

 Score =  267 bits (683), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 143/159 (89%)

Query: 5   MLLSQEALKKIDRELAKYPADQRQSAVMAALRIAQVEHGWLPAELQQEVADYIGMPAVAV 64
           MLLS++  K+IDRE+AK+P DQ+QSAVMAAL+IAQ E  WLP E+ Q+VADY+GMPA+AV
Sbjct: 1   MLLSEQTYKRIDREVAKFPPDQKQSAVMAALQIAQDETRWLPPEVMQDVADYLGMPAIAV 60

Query: 65  QEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAHHLKHKLGIDYRETTADGQFTLM 124
           QEVATFYNM+NT PVGK KI+VCTNLPC LSGGE+AAH+LK KLGIDYRETT D  FTL+
Sbjct: 61  QEVATFYNMYNTKPVGKFKISVCTNLPCQLSGGEKAAHYLKQKLGIDYRETTDDDLFTLV 120

Query: 125 EGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 163
           EGECMGACGDAPVMLVNN +MCS+MS+EKIDAL+EELKK
Sbjct: 121 EGECMGACGDAPVMLVNNKRMCSFMSDEKIDALVEELKK 159


>gi|152981548|ref|YP_001355344.1| formate dehydrogenase, cytochrome
           b556 subunit (formate dehydrogenase gamma subunit)
           [Janthinobacterium sp. Marseille]
          Length = 159

 Score = 77.0 bits (188), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 43  GWLPAELQQEVADYIGMPAVAVQEVATFYNMFNTSPVGKHKITVCTNLPCLLSGGERAAH 102
           G++P  +   +A+ + +    V  V T+Y+ F   PVG+H + +C    C   G E  A 
Sbjct: 38  GYIPPSIVPAIAEGLNISRAEVHGVITYYHFFRQHPVGEHVVQICRAEACQARGCESLAD 97

Query: 103 HLKHKLGIDYRETTADGQFTLMEGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLE 159
           H K  LG D+  TT D +FTL    C+G C   P + +++  + + +S EK ++L++
Sbjct: 98  HAKELLGCDFHGTTDDNKFTLQTVYCLGQCASGPAIQIDD-DLYARVSKEKFNSLIQ 153


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 369,567
Number of extensions: 14014
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 87
Effective length of database: 940,049
Effective search space: 81784263
Effective search space used: 81784263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)