BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1629.p
         (417 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979920|ref|YP_001353155.1| NADH dehydrogenase subunit D [J...   809   0.0  

>gi|152979920|ref|YP_001353155.1| NADH dehydrogenase subunit D
           [Janthinobacterium sp. Marseille]
          Length = 417

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/417 (90%), Positives = 398/417 (95%)

Query: 1   MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTFLQSV 60
           MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKT+LQSV
Sbjct: 1   MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60

Query: 61  PYMDRLDYVSMMCNEHGYVMAIERLLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120
           PYMDRLDYVSMMCNEH YVMAIE++L IEVPLRAQYIRVMFDEITR+LNHLMW+GAHALD
Sbjct: 61  PYMDRLDYVSMMCNEHAYVMAIEKMLNIEVPLRAQYIRVMFDEITRILNHLMWLGAHALD 120

Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASIVRNEKA 180
           VGAMGV LYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLPDTMPQ+KASI+RN KA
Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASIIRNAKA 180

Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240
           I +LNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVG+GVVSPERA+ MGF
Sbjct: 181 ISQLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERAMAMGF 240

Query: 241 TGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPIGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300
           TG MLRGSG+ WDLRKKQPYEVYDL+DFDIP+G NGDCYDRYLVRV EMRQSNRIIKQCV
Sbjct: 241 TGAMLRGSGVEWDLRKKQPYEVYDLMDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCV 300

Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360
           EWLRNN GPV+TDNHK+APP R  MKSNMEDLIHHFKLFTEGF VP GEAYAAVEHPKGE
Sbjct: 301 EWLRNNAGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPTGEAYAAVEHPKGE 360

Query: 361 FGIYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
           FG+YL+SDGANKPYR+KIRAPGF HLQ L+EMAKGHMIADAVTIIGTQDIVFGEIDR
Sbjct: 361 FGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,051,527
Number of extensions: 46095
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 331
Effective length of database: 903,079
Effective search space: 298919149
Effective search space used: 298919149
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)