BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1628.p
         (198 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980703|ref|YP_001353154.1| NADH dehydrogenase I chain C [J...   341   2e-95

>gi|152980703|ref|YP_001353154.1| NADH dehydrogenase I chain C
           [Janthinobacterium sp. Marseille]
          Length = 198

 Score =  341 bits (875), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 162/198 (81%), Positives = 177/198 (89%)

Query: 1   MTTKLETLEAALRNALGGYLQNLTVALGEVTVVVKAADYLSAMRVLRDHADTRFEQLIDL 60
           MT KLE LEAALRNALG  LQ+LT ALGEVT+VVK+ DY SAMRVLRDHAD RFE++IDL
Sbjct: 1   MTIKLELLEAALRNALGDQLQSLTQALGEVTIVVKSHDYASAMRVLRDHADLRFEEMIDL 60

Query: 61  CGVDYSTYGDGAWEGPRFAVVSHLMSISHNWRVRVRVFAPDDDLPIVASVDPIWNSAGWY 120
           CGVDYSTYGDG WEGPRFAVVSHL+SI HNWRVRVRVFA DD++P+VAS+  IW +A WY
Sbjct: 61  CGVDYSTYGDGLWEGPRFAVVSHLLSIKHNWRVRVRVFAADDEMPVVASMIDIWATANWY 120

Query: 121 EREAFDFYGILFDGHPDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDAEQKRVIYQPVTI 180
           EREAFDF+GILF+GH DLRRILTDYGFIGHPFRKDFPVSGYVEMRYD EQKRVIYQPVTI
Sbjct: 121 EREAFDFFGILFEGHNDLRRILTDYGFIGHPFRKDFPVSGYVEMRYDPEQKRVIYQPVTI 180

Query: 181 EPREITPRIIREENYGIK 198
           +PRE  PR+IREE YG K
Sbjct: 181 DPRENVPRVIREEQYGAK 198


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 460,587
Number of extensions: 19052
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 119
Effective length of database: 928,958
Effective search space: 110546002
Effective search space used: 110546002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)