BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1627.p
         (158 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980178|ref|YP_001353153.1| NADH dehydrogenase I chain B [J...   314   1e-87

>gi|152980178|ref|YP_001353153.1| NADH dehydrogenase I chain B
           [Janthinobacterium sp. Marseille]
          Length = 158

 Score =  314 bits (805), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 146/158 (92%), Positives = 154/158 (97%)

Query: 1   MSIEGVLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFR 60
           M+IEGVLNEGFVTT+ DK+INWTRTGS+WPMTFGLACCAVEMMH GASRYDLDRFG VFR
Sbjct: 1   MAIEGVLNEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGVVFR 60

Query: 61  PSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD 120
           PSPRQSD+MIVAGTLCNKMAPALRKVYDQM EPRWVISMGSCANGGGYYHYSYSVVRGCD
Sbjct: 61  PSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCD 120

Query: 121 RIVPVDVYVPGCPPTAEALLYGVIQLQNKIKRTNTIAR 158
           RIVPVDVYVPGCPPTAEALLYG++QLQNKI+RTNTIAR
Sbjct: 121 RIVPVDVYVPGCPPTAEALLYGIMQLQNKIRRTNTIAR 158


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 332,526
Number of extensions: 11284
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 82
Effective length of database: 940,049
Effective search space: 77084018
Effective search space used: 77084018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)