BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1626.p
         (119 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980321|ref|YP_001353152.1| NADH dehydrogenase I chain A [J...   194   1e-51

>gi|152980321|ref|YP_001353152.1| NADH dehydrogenase I chain A
           [Janthinobacterium sp. Marseille]
          Length = 140

 Score =  194 bits (493), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 102/119 (85%)

Query: 1   VNLENYFPVLLFILVGIGVGVAPQLLGRLLGPHKPDAQKTSPYECGFEAFEDARMKFDVR 60
           VNLENYFPVLLFILVGIGVGV PQ+LGR+L PHKPDAQK SPYECGFEAFEDARMKFDVR
Sbjct: 22  VNLENYFPVLLFILVGIGVGVVPQVLGRVLAPHKPDAQKLSPYECGFEAFEDARMKFDVR 81

Query: 61  YYLIAILFILFDLETAFFFPWGVSMRELGWQGFVTMMVFIAEFVVGFWYIWKKGALDWE 119
           YYL+AILFILFDLE AF  PW V+MRE+G  GF +MM+F+    +G  + WKKGALDWE
Sbjct: 82  YYLVAILFILFDLEVAFLVPWAVAMREVGMLGFWSMMIFLGVLTIGLVFEWKKGALDWE 140


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.149    0.504 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 298,494
Number of extensions: 11718
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 47
Effective length of database: 954,837
Effective search space: 44877339
Effective search space used: 44877339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 124 (52.4 bits)