BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1624.p
         (248 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980270|ref|YP_001353150.1| triosephosphate isomerase [Jant...   363   e-102

>gi|152980270|ref|YP_001353150.1| triosephosphate isomerase
           [Janthinobacterium sp. Marseille]
          Length = 248

 Score =  363 bits (933), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/248 (71%), Positives = 206/248 (83%)

Query: 1   MRRKLVAGNWKMNGSLAANAALVAGIKEGLPAEVCDVAVCVPAPYLAQVQGAVAGSPVAL 60
           MRRKLVAGNWKMNGSLAAN  L+  IK GL     DVAVCVP+PY AQ QG + G+ +AL
Sbjct: 1   MRRKLVAGNWKMNGSLAANTLLLTEIKSGLGNATSDVAVCVPSPYFAQCQGLLNGAAIAL 60

Query: 61  GAQDMSAHAAGAYTGEVSAAMLQEFGVHYVILGHSERRAYHGESDAAVAAKTVTALKAGL 120
           GAQD+S+H AGAYTGEVS +MLQEF   YVI+GHSERRAY  E++  +A KTV AL AGL
Sbjct: 61  GAQDVSSHEAGAYTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGL 120

Query: 121 VPVVCVGETLEQREAGQTNEIVGGQLDVVLTALSNEDAARIVVAYEPVWAIGTGKTATPE 180
            P+VCVGETL+QREAGQT+ +V  QL+VVL +++  D A+IVVAYEPVWAIGTGKTATP 
Sbjct: 121 TPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPA 180

Query: 181 MAQEVHAMLRARLGAKSAEAAAKVRILYGGSMKPDNAQQLLVMADIDGGLIGGAALKAED 240
           MAQEVHAMLR +L AK+AEAA +VRILYGGSMKP+NA++LL M+DIDGGLIGGAALKA D
Sbjct: 181 MAQEVHAMLRKQLQAKNAEAAMQVRILYGGSMKPENAKELLAMSDIDGGLIGGAALKAAD 240

Query: 241 FLAIIKAA 248
           FLAI+ AA
Sbjct: 241 FLAIVHAA 248


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 509,446
Number of extensions: 19410
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 167
Effective length of database: 921,564
Effective search space: 153901188
Effective search space used: 153901188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)