BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1615.p
         (430 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980450|ref|YP_001354295.1| NADH dehydrogenase [Janthinobac...   139   3e-34
gi|152983080|ref|YP_001352723.1| FAD-dependent pyridine nucleoti...    91   2e-19

>gi|152980450|ref|YP_001354295.1| NADH dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 457

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 188/409 (45%), Gaps = 36/409 (8%)

Query: 25  VRITMIDRSNHHLFQPLLYQVATAGLSAPA--------------ISAPIRAILAQQRNLT 70
           + + ++DR++ H+++PLL++VA   + A +              +  P   +   +   T
Sbjct: 59  ISVVLVDRAHTHIWKPLLHEVAAGSMDANSHQLEYAAQARWHRFVYQPGELLGLDRERKT 118

Query: 71  TLMAAVTEIDTAGKSVTLEDGSVLGYDYLIVAAGSTHSYFGRDEWSELAPGLKTLEDAFE 130
             ++ + ++D     V L     + YD L+++ GS  ++F      + A  L  +  A  
Sbjct: 119 ISVSGLNDVD----GVELLPRRDIPYDTLVLSIGSVTNFFNVPGAEKNAISLDNMLQAEH 174

Query: 131 IRKRILMAFEHAERETDARRRQEWLTFTVIGGGATGVEMAGTLVEIARHTLSGEFRNIDP 190
            R+R++     A++       Q  L   +IGGGATGVE++  L   A    +     +DP
Sbjct: 175 FRRRMIGLCVRADQT------QSKLNIAIIGGGATGVELSAELRNTAEILGAYGLHQLDP 228

Query: 191 H-SARVVLVEGSERVLGAYPEDLSEKAREQLHKLGVDVRTGCRVVHIDETCVRYANFDGE 249
           H   R+ ++E + R+L A P+ +S K  E L+ + ++V T  +V  + E  V  AN    
Sbjct: 229 HRDIRISIIEAAPRILSALPDRVSSKTTELLNHMAIEVLTEAKVSEVQEHAVLLAN---G 285

Query: 250 QSLATRTVIWSAGVAASPLGKKLGVPVDRAGRVPVTPTLCIGGHEEVFVIGDLAAA--QS 307
            S+     +W+AG+ A  +  +LG+PV+R G+V VT +L       +F  GD AA     
Sbjct: 286 TSIPADLTVWAAGIRAPQILGELGLPVNRLGQVVVTQSLQTEIDPNIFAFGDCAACPWPE 345

Query: 308 EGKPVPGVSPAAKQMGRVAARNIKHHIAGQAAETFVYKDYGSLATIGRRAAIA-----MV 362
           +   VP  + AA Q        IK  +  Q    F Y+D GSL ++GR  A+      ++
Sbjct: 346 KNSTVPPRAQAAHQQASFLFNAIKKRLDNQELPLFQYRDLGSLVSLGRFDAVGNLMGPLL 405

Query: 363 GKLKF-SGYPAWLFWLFVHVYFLIGFRNRIMVMADWAWAYFTFKRSARV 410
           G+  F  G  A L ++ ++   L+     +   AD    +   K S RV
Sbjct: 406 GRAMFIEGVLARLLYISLYRMHLVALHGVVRTCADTVAHWLRRKTSPRV 454


>gi|152983080|ref|YP_001352723.1| FAD-dependent pyridine
           nucleotide-disulphide oxidoreductase [Janthinobacterium
           sp. Marseille]
          Length = 403

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 184/424 (43%), Gaps = 63/424 (14%)

Query: 4   VIIIGCGFGG----LAAAR---ELANAEVRITMIDRSNHHLFQPLLYQVATAGLSAP--- 53
           +++IG GF G    LA+AR   ++  ++V I +I        +P LY+    G+ AP   
Sbjct: 5   ILVIGAGFAGMWSALASARLLDQVGRSDVEIILIAPEPKLHVRPRLYEQNPEGMKAPLQE 64

Query: 54  ---AISAPIRAILAQQRNLTTLMAAVTE--IDTAGKSVTLEDGSVLGYDYLIVAAGSTHS 108
              A+       L QQ ++     ++TE  +DTA + +         YD L++AAGS   
Sbjct: 65  IFNAVGVTFIQGLVQQIDVANQELSITETGVDTASRKIK--------YDRLVLAAGS--- 113

Query: 109 YFGRDEWSELAPGLKTLEDAFEIRK----RILMAFEHA-ERETDARRRQEWLTFTVIGGG 163
              R    ++ PGLK  E AF + +     +L +  H   ++T++  R    T  V G G
Sbjct: 114 ---RLHCPQI-PGLK--EHAFNVDQIADAAVLESHIHGLAQKTESTARN---TVVVAGAG 164

Query: 164 ATGVEMAGTLVEIARHTLSGEFRNIDPHSARVVLVEGSERV---LGAYPEDLSEKAREQL 220
            TG+E A  +    R     +       S  V++VE ++ +   LGA P  +  +A   L
Sbjct: 165 FTGIETAAEMPARLREVFGQD------ASVNVIMVERADAIGPDLGAGPRPVITQA---L 215

Query: 221 HKLGVDVRTGCRVVHIDETCVRYANFDGEQSLATRTVIWSAGVAASPLGKKLGVPVDRAG 280
            +LGV  + G  V  +D   V   N  GE+ +   TVIW+AG  AS L  ++    D  G
Sbjct: 216 TELGVTWKLGSGVASVDSNGVTLEN--GER-IDADTVIWTAGARASTLTAQIPAERDNFG 272

Query: 281 RVPVTPTLCIGGHEEVFVIGDL--AAAQSEGKPVPGVSPAAKQMGRVAARNIKHHIAGQA 338
           R+ V   L + G   VF  GD   AA   EG         A  +GR A  N+   + G+ 
Sbjct: 273 RLHVDRNLKVKGLATVFATGDCAYAATDDEGNFAMMSCQHAMNLGRSAGHNVAADLVGET 332

Query: 339 AETFVYKDYGSLATIGRRAAIAMVG---KLKFSGYPAWLFWLFVH---VYFLIGFRNRIM 392
              +    Y +   +G   A+   G   ++K SG  A      ++   +Y     R  + 
Sbjct: 333 PIPYSQAKYVTCLDLGPWGAVYTEGWDRQVKLSGAEAKALKTKINTEWIYPPNADRAEVF 392

Query: 393 VMAD 396
           V+AD
Sbjct: 393 VLAD 396


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,004,667
Number of extensions: 42055
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 2
Length of query: 430
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 344
Effective length of database: 903,079
Effective search space: 310659176
Effective search space used: 310659176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)