BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1614.p
         (711 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase/po...  1270   0.0  

>gi|152979779|ref|YP_001353149.1| polynucleotide
           phosphorylase/polyadenylase [Janthinobacterium sp.
           Marseille]
          Length = 711

 Score = 1270 bits (3286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/711 (89%), Positives = 669/711 (94%), Gaps = 2/711 (0%)

Query: 1   VFNKVSKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60
           +FNKV+KTFQYGQHQVTLETGEIARQASGAV+VS+EDTV+LATVVA+K+AKPGQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVAKKDAKPGQDFFPLT 60

Query: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120
           VDY+EKTYAAGRIPGGFFKREG+PSEKETLTSRLIDRPIRPLFPEGYLNEVQ+IIHV+SV
Sbjct: 61  VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120

Query: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180
           NPEIDPDI AMIGASAALS+AGIPF GPVGAARVGYIDGQYVLNPTTSQL  S LDLVVA
Sbjct: 121 NPEIDPDIAAMIGASAALSVAGIPFAGPVGAARVGYIDGQYVLNPTTSQLAKSDLDLVVA 180

Query: 181 GTETAVLMVESEADQLSEDVMLGAVVFGHEQSKAVIDAIHALVRDGGKPEVQWTAPAKNE 240
           GTE AVLMVESEA QLSE+VMLGAVVFGHEQ KAVIDAIH LVRDGGKPEVQW+   KNE
Sbjct: 181 GTEIAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHDLVRDGGKPEVQWSPAPKNE 240

Query: 241 ALIARVAQLAEGPLREAYQTKDKQARTEKLKAVSAQVNEALVAEAAANNGVAADAAEVGS 300
           ALI+RVA  AE  LR AYQTKDKQART KLK   A+VN  L AEAA+    A D AEVG+
Sbjct: 241 ALISRVAHFAEAKLRAAYQTKDKQARTTKLKDAFAEVNNELAAEAASIGAAAPDTAEVGN 300

Query: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360
           ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPI+IRTGVLPRTHGSALFTRGETQALVIAT
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 361 LGTARDEQKIDGLLGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
           LGTARDEQKID L+GEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRAL+AAL
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAAL 420

Query: 421 PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKSHVAGIAMGLIKEGNKF 480
           PA ++FSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPM+SHVAGIAMGLIKEG+KF
Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGSKF 480

Query: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540
           AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVAL QAKEGR HILG
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRVHILG 540

Query: 541 KMQEAVPAGRA-ELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 599
           +M++AVP+G   ELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV
Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600

Query: 600 VTIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQI 659
           VTIASVDA+AGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQV+PGKDGLLHISQI
Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660

Query: 660 ANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEG-DAAAPQE 709
           ANERVNAVADYL+EGQQVRVKVLETDDRGRLKLSMKAA AEE  + AA QE
Sbjct: 661 ANERVNAVADYLQEGQQVRVKVLETDDRGRLKLSMKAAVAEENPEPAAAQE 711


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,489,947
Number of extensions: 62177
Number of successful extensions: 235
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 2
Length of query: 711
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 621
Effective length of database: 888,291
Effective search space: 551628711
Effective search space used: 551628711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)