BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1612.p
         (174 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982730|ref|YP_001353147.1| hypothetical protein mma_1457 [...   137   3e-34

>gi|152982730|ref|YP_001353147.1| hypothetical protein mma_1457
           [Janthinobacterium sp. Marseille]
          Length = 169

 Score =  137 bits (346), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 93/151 (61%), Gaps = 1/151 (0%)

Query: 25  LAGCASLLQPPVQPGEPEDQVVARLGPPTNVYPDGNVRVFEYAAGAFGQYQYLARIGPDH 84
           L  CAS + PP+  GEPE  VVA+LG PT+   D N  + EY    +GQ   +AR     
Sbjct: 16  LGACASFMPPPIAIGEPEASVVAKLGRPTSRIEDRNGYLLEYTRNPWGQATDMARFDRSG 75

Query: 85  RLISYAQVWTIENFRAIRPKQDTKLDVLRRVGRPTEVTRYARIPFEAWNYGYKESGVWNS 144
            L+SY QV T+E F  I+P   TK DVLR +G P+E +  +R+  E W+Y YKE+GVWNS
Sbjct: 76  NLVSYEQVLTVEKFATIKPGIATKDDVLRTIGHPSETSYLSRLQLEVWSYPYKEAGVWNS 135

Query: 145 QMTVYFNDQGIVEKVENGPDPRFD-DSRFRF 174
            M V+F++ GIV+ ++N  D RF+ D  F F
Sbjct: 136 VMHVHFDNNGIVKMMQNAQDMRFERDGMFGF 166


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 419,320
Number of extensions: 16714
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 97
Effective length of database: 936,352
Effective search space: 90826144
Effective search space used: 90826144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)