BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1610.p
         (127 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981748|ref|YP_001351855.1| translation initiation inhibito...    68   2e-13
gi|152981670|ref|YP_001352577.1| translation initiation inhibito...    66   6e-13

>gi|152981748|ref|YP_001351855.1| translation initiation inhibitor
           [Janthinobacterium sp. Marseille]
          Length = 155

 Score = 68.2 bits (165), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 3/111 (2%)

Query: 20  PFARAVAADGWLYVSGQVPMEN-GEVIDGGIVAQSHKAIQNVLA-ILKEAGYGPEHVVRC 77
           P+++ VA  G +Y+SG +P+   G  I G  + +  KA+ + +   LK  G   + V+  
Sbjct: 45  PYSQMVAHGGTIYLSGVLPLNAAGNAIQGTTIEEQTKAVLDHIGEKLKSQGLSHDDVLMS 104

Query: 78  GVWLDDARDFPSFNKVFKEYFGANPPARACV-VSSMVVDCKVEVDCVAFKR 127
            V+L D  DF + N+V+ EYF  NPPARA V V+ +  D  +E+  +  ++
Sbjct: 105 TVYLKDLNDFAAMNRVYGEYFKTNPPARATVQVARIPRDALIEIAVIVGRK 155


>gi|152981670|ref|YP_001352577.1| translation initiation inhibitor
           [Janthinobacterium sp. Marseille]
          Length = 131

 Score = 66.2 bits (160), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 4/111 (3%)

Query: 20  PFARAVAADGWLYVSGQVPM--ENGEVIDGGIVAQSHKAIQNVLAILKEAGYGPEHVVRC 77
           P+A+   A G+ + SGQ+P+  E G V +G + AQ+ +++ NV A+L  AG   + V++ 
Sbjct: 18  PYAQGTQALGFAFCSGQLPINPETGAVPEG-VEAQTRQSLSNVAAVLAAAGASMDDVLKT 76

Query: 78  GVWLDDARDFPSFNKVFKEYFGANPPARACV-VSSMVVDCKVEVDCVAFKR 127
            V+L D  DFP  N ++  YF  +PPAR+ + V+ +  D  VEV+ +A  +
Sbjct: 77  TVFLKDMNDFPLMNAIYATYFPGDPPARSTIEVARLPKDVLVEVEAIALAK 127


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 345,093
Number of extensions: 14069
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 54
Effective length of database: 951,140
Effective search space: 51361560
Effective search space used: 51361560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)