BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1608.p
         (294 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980245|ref|YP_001354004.1| RpiR family transcriptional reg...   112   3e-26

>gi|152980245|ref|YP_001354004.1| RpiR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 286

 Score =  112 bits (280), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 145/271 (53%), Gaps = 9/271 (3%)

Query: 7   IISRITERSSTLRFAEQKVAQAILGDLSAAASASIGELAAKAGVSVASVTRFAKAMGCRD 66
           ++  I  +  +L  +E+KVA A+L     A + +I  LA KA VS  +V RF +A+G   
Sbjct: 2   LLDSIRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKAEVSEPTVVRFCRAIGFDG 61

Query: 67  VREFKFLLAQAVAVGQRFFDGAKTLPSEQPPELAD-VVYRDIHAVLELNRAMLNPEMLMQ 125
            + FK  LAQ +A+     D +  L  +   +L D V  R I+ +L+L R  L+   + Q
Sbjct: 62  WQAFKLKLAQGLALAPGTGDESPML-EDMAADLVDKVCNRSINTLLDL-RNSLDANAIEQ 119

Query: 126 AAHLLLGARMIYCFGMGGGSTMISDEARYRLVRLGRPVATYHDALLQKMVAATLDRDDVL 185
           A  +L  A  I  +G G  S +I+ +A+++  R G P   Y D  +  + A+ L + DV+
Sbjct: 120 ALQVLGRANTIEFYGQGT-SGIIAADAQHKFFRSGVPTVAYSDPHIHSIAASLLKKGDVV 178

Query: 186 LVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKMADVLLPIK-ALETDLIFKPSS 244
           +  S  GS   LL S ++AR  G  ++ +   G+PLA++A VL+PI     TD  + P S
Sbjct: 179 VAISQRGSSLSLLRSVQLARSSGAAIVVLAPSGTPLAELATVLIPIDLHFHTD-PYTPIS 237

Query: 245 SRYAMMATLDMLVLELALLHKQSSQERLRRL 275
           +R A +  +D+L + LAL   + S ER +++
Sbjct: 238 ARLAHLVVIDILAVGLAL---RLSPERRKKM 265


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 597,131
Number of extensions: 22794
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 211
Effective length of database: 914,170
Effective search space: 192889870
Effective search space used: 192889870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)