BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1607.p
         (430 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981391|ref|YP_001352131.1| low-specificity D-threonine ald...    74   2e-14
gi|152981283|ref|YP_001351715.1| low-specificity D-threonine ald...    61   1e-10

>gi|152981391|ref|YP_001352131.1| low-specificity D-threonine
           aldolase [Janthinobacterium sp. Marseille]
          Length = 380

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 143/351 (40%), Gaps = 43/351 (12%)

Query: 44  EDVSLPAAVLYEEKIAHNLKWMQDFVGQYQVKLAPHGKTTMAPKLFARQLDTGAWGITLA 103
             VS PA VL  +    N + M +   ++ V L PH K   +  +  RQL+ GA G+   
Sbjct: 20  SSVSTPALVLDLDAFDANTQRMAELARRHGVALRPHAKAHKSTAIALRQLELGAVGVCCQ 79

Query: 104 TAHQTLAAYHHGVRRVIMANQLVGKRNMAIISELLADPEFEFFCLVDSAELAEQLGAFFA 163
              +       GV  + ++N+ VG   +A+  EL           VD     E LG    
Sbjct: 80  KMSEAYPFAAKGVLSIHISNEFVGADKVAMAIELAN--YVRLSVCVDHVAQVEALGQAAT 137

Query: 164 ERKQTLNVLLELGPAGGRTGVRDAAQQTAVLDAIARWDSLALAGVEVYEGVLKEEVDIRR 223
           +    + VL E+    GR GV+      A++D IA    L   G++ Y G ++    +  
Sbjct: 138 QAGVLITVLPEVDIGQGRCGVKGNDALAALVDRIAAHKGLRFGGLQAYHGGIQH---LAS 194

Query: 224 FLQRAVTCLKELAAQGQLAHRL-ARGPA--VLTGAGSAWYDVVAEEFGQAEIGAALDVVL 280
           + QR         A  Q    L ARG A  V+TG G+        EF   ++ + +   +
Sbjct: 195 WEQRRQAAETAAQATAQYVQFLAARGIACDVITGGGTG-----TAEF---DVSSGVYTEI 246

Query: 281 RPGCYLTHDVGIYRAAQAQIQVRNPVAHQMRSQLQPALQLW--AYVQSIPEADKAIIALG 338
           +PG Y+  D G Y +   Q               +PA  L+  + V S  +   A+  +G
Sbjct: 247 QPGSYVFMD-GDYGSKDWQ------------GGWKPAHSLFIASTVMSTGKPGMAVCDVG 293

Query: 339 KRDAAFDAGLPAPVTRFRPG-HDTQPQATPTHWEVTGMMDQHAYLKIAEGD 388
            +  A D+GLP      RPG H  Q Q    +       D+H  L+IA GD
Sbjct: 294 LKGVAVDSGLPV----LRPGDHGGQLQYKAAN-------DEHGILQIAAGD 333


>gi|152981283|ref|YP_001351715.1| low-specificity D-threonine
           aldolase [Janthinobacterium sp. Marseille]
          Length = 379

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 149/404 (36%), Gaps = 62/404 (15%)

Query: 22  LGPLEQPLAPQQAGRVRWNLLNEDVSLPAAVLYEEKIAHNLKWMQDFVGQYQVKLAPHGK 81
           +G  E   A Q A  +  + L+  V  PA ++  +    NL  +   V Q  +K+  HGK
Sbjct: 1   MGHKELSFASQAAPALPGDQLDH-VDTPALLVDLDAFEDNLARVHTRVLQAGLKVRSHGK 59

Query: 82  TTMAPKLFARQLDTGAWGITLATAHQTLAAYHHGVRRVIMANQLVGKRNMAIISELLADP 141
              +P +  RQL  GA GI      +       G+  V++ NQ+VG R +  ++ L A  
Sbjct: 60  AHKSPAIAHRQLAAGATGICCQKVSEAEIFVEAGITDVLITNQIVGLRKVTRVAALAARA 119

Query: 142 EFEFFCLVDSAELAEQLGAFFAERKQTLNVLLELGPAGGRTGVRDAAQQTAVLDAIARWD 201
                  VD     EQ+G   + +   L+VL+E+     R G+ +A Q   +   I ++ 
Sbjct: 120 RLGI--CVDHPIQVEQIGDAASRQGSHLDVLIEVDIGHQRCGISNAHQAIDLARTIEQYS 177

Query: 202 -SLALAGVEVYEGVLKEEVDIRRFLQRAVTCLKELAAQGQLAHRLARGPAVLTGAGSAWY 260
             L  AG+  + G  +    +R   +RA      +     + H L        G      
Sbjct: 178 PHLRFAGIHAFRGSAQH---MRLPQERAAAVASAVEKVRGIIHELEDA-----GFPCTTV 229

Query: 261 DVVAEEFGQAEIGAALDVVLRPGCYLTHDVGIYRAAQAQIQVRNPVAHQMRSQLQPALQL 320
                     E G++L   ++PG Y+  D                               
Sbjct: 230 TGGGTGTYMLEAGSSLYTEVQPGSYVLMDTD----------------------------- 260

Query: 321 WAYVQSIPEADKA-----------IIALGKRDAAFDAGLPAPVTRFRPGHDTQPQATPTH 369
             Y  + PEAD A           +I++ ++ A  D GL A    F   H   P+     
Sbjct: 261 --YAANTPEADSAPLRHALFGLCTVISVQEKHAVLDGGLKA----FAVDHGL-PRLQLPG 313

Query: 370 WEVTGMMDQHAYLKIAEG-DDIRVGDMIAFDISH--PCLTFDKW 410
           W V  + D+H  +    G   ++VGD +    SH  P +    W
Sbjct: 314 WSVQTLSDEHTTIVPEAGAAPVKVGDKVRLIPSHCDPTVNLHDW 357


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,060,784
Number of extensions: 45601
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 430
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 344
Effective length of database: 903,079
Effective search space: 310659176
Effective search space used: 310659176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)