BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1604.p (509 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980958|ref|YP_001351821.1| GntR family transcriptional reg... 324 8e-90 gi|152980987|ref|YP_001354760.1| GntR family transcriptional reg... 282 3e-77 gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 149 6e-37 gi|152981206|ref|YP_001352388.1| GntR family transcriptional reg... 119 6e-28 gi|152981144|ref|YP_001352922.1| GntR family transcriptional reg... 102 4e-23 >gi|152980958|ref|YP_001351821.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 490 Score = 324 bits (831), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 179/474 (37%), Positives = 273/474 (57%), Gaps = 12/474 (2%) Query: 35 LYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGNWLEARPRS 94 LY +LA+ + I++G G+R+PS+R + H++S++T + +E +E+ P+S Sbjct: 3 LYEKLAKDIEELIENGVFRPGERLPSIRQTSQHHRLSITTVVHAFLLLESKGVIESHPQS 62 Query: 95 GYFVRQPRRSVIRPVQEPKSLMAIDP----EQYAGIHEKVSKYIALRQSGAPRIDLSGMT 150 GYFVR P +S V P+ L P Q H +S ++ P L Sbjct: 63 GYFVRVPPQSANGKV--PQELRTSQPLAISSQVDVSHLVLSTLRSITNDAVP---LGSPY 117 Query: 151 CAPELYAVETLKQAAMRALRERPEL-LTSAMPHNGNATFRQAVARRALHHGMRIDHEEVV 209 P L+ E + + A R + + +T A+P RQ +ARR L +G ID E+V Sbjct: 118 PDPSLFPSEKINRYAYGITRRQTKWGVTDALPPGHPDLIRQ-IARRYLENGSAIDPNEIV 176 Query: 210 VTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGISVEAL 269 VT G EA+NL L+AV GD +AVESPT++ +L A+E +GM+A+E+ T P GI + AL Sbjct: 177 VTVGATEAINLCLQAVGKAGDIVAVESPTFYAMLHAIERMGMRAIEVATHPREGIDLAAL 236 Query: 270 ELAVRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEELRLPLIEDDAYTELADGSV 329 E A+ I +V+PN QNPLG MPDE K LV L ++P+IE+D Y EL G V Sbjct: 237 E-AILDQHQIAACMVMPNFQNPLGFQMPDEKKRALVELITRRQVPVIENDVYNELYFGDV 295 Query: 330 APSSLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVT 389 P+SLKS D G V++CAS +K L R+GW GR+ ++V+ LKF +T Q+ Sbjct: 296 HPTSLKSYDTEGLVLHCASFSKSLTSAYRIGWAMPGRYRDQVEKLKFLNTLTTPTIPQLA 355 Query: 390 AADFIASPGYDRHLRRLRQLLKEQRERMAESIAAYFPEGTRLNLPNGGVGLWVELPSQVC 449 A+++ GY+ HLR +R++ +Q M ++ +FPEGT+ + P GG LWVELP QV Sbjct: 356 IAEYLEHDGYEHHLRHIRKVYAQQANIMRAAVKRFFPEGTQTSEPQGGYVLWVELPPQVD 415 Query: 450 SQQLFERALSEGVGVSPGAIFSNSNRYGHFLRICCGHPFTRELDQALRRLGSIG 503 S +L+E AL +G+ + PG +FS +N Y +F+R+ +P++ ++ A+R +G + Sbjct: 416 SMKLYELALQQGITIGPGYMFSATNGYNNFIRLNYSYPWSAGIEDAIRTIGKLA 469 >gi|152980987|ref|YP_001354760.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 473 Score = 282 bits (721), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 172/476 (36%), Positives = 253/476 (53%), Gaps = 8/476 (1%) Query: 35 LYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGNWLEARPRS 94 LY LA +IQ G L GDR+PSVR VS ST Q +E + AR RS Sbjct: 3 LYETLAAELAQSIQDGVLRIGDRLPSVRQASTSRAVSPSTVFQAYYLLEARGLIRARERS 62 Query: 95 GYFVRQPRRSVIRPVQEPKSLMAIDPEQYAGIHEKVSKYIALRQSGAPR--IDLSGMTCA 152 GY+V + + P+ A P + + + + + +S R + + Sbjct: 63 GYYVAGAAQKL-----PPEPEQASQPNEASSPVDISERVFEVLESAKMRELVPFGSAFPS 117 Query: 153 PELYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALHHGMRIDHEEVVVTH 212 P L+ + L +A ++++ GN R+ +A R L G+ I +E+V+T+ Sbjct: 118 PLLFPMARLARAMASSVQQLDPWSAVDDLTPGNPQLRRQIALRYLADGLHIHTDEIVITN 177 Query: 213 GCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELA 272 G ++ALNL L AV PGD + VESPT++ LQALE G+ A+E+PT P GI + AL A Sbjct: 178 GALDALNLCLAAVTRPGDAVLVESPTFYAALQALERNGLHAIEVPTHPREGIDLAALARA 237 Query: 273 VRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEELRLPLIEDDAYTELADGSVAPS 332 + + K ++ QNPLG +MPDE K LV L + +PLIEDD Y EL G P Sbjct: 238 IERH-QPKACWLMTTFQNPLGSLMPDEKKRDLVTLLAQHEIPLIEDDVYGELYFGDKRPM 296 Query: 333 SLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQVTAAD 392 K+ D G V++C+S +K LAPG R+GW GR+ V K T T A Q A Sbjct: 297 PAKAFDSKGLVMHCSSFSKCLAPGYRVGWAAPGRFTRAVARRKLTTTLAASAPAQAALAT 356 Query: 393 FIASPGYDRHLRRLRQLLKEQRERMAESIAAYFPEGTRLNLPNGGVGLWVELPSQVCSQQ 452 ++ GYD+HLR+LR L Q+ + E+IA FP GT+ P GG LW+ELP++V + + Sbjct: 357 YLEKGGYDKHLRQLRHTLSVQQTQFMEAIARSFPAGTQATRPKGGYFLWLELPAKVNALE 416 Query: 453 LFERALSEGVGVSPGAIFSNSNRYGHFLRICCGHPFTRELDQALRRLGSIGHSLAG 508 L +AL++G+ ++PG IFS + + + +R+ GH + + AL LG + +AG Sbjct: 417 LHRQALAQGISLAPGPIFSAHHGFTNCIRLNYGHVWDARSEAALASLGQLVQKMAG 472 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 149 bits (375), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 104/343 (30%), Positives = 166/343 (48%), Gaps = 12/343 (3%) Query: 144 IDLSGMTCAPELYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALHHGMRI 203 I +G +PE + VE +K A L + ++ P +G A R+ +A G I Sbjct: 38 ISFAGGLPSPETFPVEHMKAAFDNVLSRQGKIALQYGPSDGYAPLREWIADSLSIEGATI 97 Query: 204 DHEEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTG 263 ++V++ G +AL+L + + + VE+P+Y G LQA + + +PT + G Sbjct: 98 TPDQVLMVSGSQQALDLLGKVLIEENSKVLVETPSYLGALQAFSVYQPQFVSVPTDDY-G 156 Query: 264 ISVEALELAVRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEELRLPLIEDDAYTE 323 + EA++ + + +PN NP G M E + LV C LPLIEDD Y Sbjct: 157 LLPEAVD---GIADGARLLYALPNFHNPTGRTMSVERRIALVETCARRGLPLIEDDPYGA 213 Query: 324 LADGSVAPSSLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGG----RWHERVKMLKFTHT 379 L+ + + + + SG VIY S +KVL PG+RLG++ G R E+ K HT Sbjct: 214 LSYRAEPLPKMLTMNPSG-VIYMGSFSKVLTPGIRLGYVVGPTPLIRKLEQAKQAADLHT 272 Query: 380 RANEEWTQVTAADFIASPGYDRHLRRLRQLLKEQRERMAESIAAYFPEGTRLNLPNGGVG 439 + TQ+ + I H+ +R L Q + M +++A + PEG + N P GG+ Sbjct: 273 ---SQLTQMVVYEAIKDGFLAEHIPSIRTLYANQCQVMLDALAEFAPEGVKWNKPEGGMF 329 Query: 440 LWVELPSQVCSQQLFERALSEGVGVSPGAIFSNSNRYGHFLRI 482 +WV LP + QL E A+++ V PGA F + + LR+ Sbjct: 330 IWVTLPKHIDCMQLLEEAIAQKVAFVPGAPFYANEPEKNTLRL 372 >gi|152981206|ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 488 Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 116/471 (24%), Positives = 199/471 (42%), Gaps = 27/471 (5%) Query: 9 AHQPAATPVPAGAASPPPAAESGRQPLYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQH 68 A P+ TP A P + +G L ++ + I L G RMPS+R QH Sbjct: 5 AKSPSTTPATTEAPRPLLSRTAGSS-LIEQIVQLITSRIDDKILRTGARMPSIRQFSDQH 63 Query: 69 QVSLSTALQTLRHMEEGNWLEARPRSGYFVRQPRRSVIRPVQEPKSLMAIDPEQYAGIHE 128 QVS T ++ + G LE+R SG++VR R ++ P + A P + Sbjct: 64 QVSRFTVVEAYDRLVAGGLLESRRGSGFYVRD-RAPMLTPRAQGLQSAAQQPVDVVWLVR 122 Query: 129 KVSKYIALRQSGAPRIDLSGMTCAPELYAVETLKQAAMRAL-RERPELLTSAMPHNGNAT 187 + + + P + G+ P + L A+RA+ R+ P LL G Sbjct: 123 NMFRQL-------PPQKMPGVGLLPNEWLDGDLVANALRAVSRQNPNLLLQYGIPQGFLP 175 Query: 188 FRQAVARRALHHGMRIDHEEVVVTHGCIEALNLALRAVAGPGDTIAVESPTYFGLLQALE 247 RQ + + + ++ V T G + L+L R PGDTI V+ P +F + + Sbjct: 176 LRQQLQLKMAELEISATPDQFVTTAGVTQGLDLVARHYIQPGDTIFVDDPGWFLMFGSFA 235 Query: 248 NLGMKALEIPTSPHTGISVEALELAVRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRL 307 LG K + IP P G + L A+ K ++ L NP + +++++ Sbjct: 236 ALGAKVVGIPRLPD-GPDIAQLT-ALAELHRPKLFIINSILHNPTSTSLSAAKAFQVLKI 293 Query: 308 CEELRLPLIEDDAYTELADGSV--APSSLKSRDRSGNVIYCASLNKVLAPGMRLGWMNG- 364 E+ ++EDD Y ++ G+ A + + + D+ VIY +K LA +R+G++ Sbjct: 294 AEQYDFMIVEDDIYCDMHPGAAVQAATRIAALDQLNRVIYLGGFSKTLAANLRVGFIATS 353 Query: 365 ---GRWHERVKMLKFTHTRANEEWTQVTAADFIASPGYDRHLRRLRQLLKEQRERMAESI 421 R KML T E T+ ++ Y +H RLR L R++ + Sbjct: 354 PEIARQLADRKMLTALTT---TEITERVVYRILSEGHYRKHTDRLRTKLNAVRDKTIRQM 410 Query: 422 AAYFPEGTRLNLPN-GGVGLWVELPSQVCSQQLFERALSEGVGVSPGAIFS 471 G +++ G+ W ++ L E+A+ +G ++PG++FS Sbjct: 411 ERI---GIKIHFHTPAGMFAWTDVGCDATI--LAEKAMEQGYLLAPGSLFS 456 >gi|152981144|ref|YP_001352922.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 477 Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 106/435 (24%), Positives = 184/435 (42%), Gaps = 19/435 (4%) Query: 34 PLYRRLAEHYQGAIQSGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGNWLEARPR 93 P+Y ++ + ++ AI+ G L AGDR+P+VR L + ++ T R + + +L+ R Sbjct: 19 PMYLQICQRFKTAIERGHLHAGDRVPAVRALATEMNLARGTVEMAYRILTDEGYLQVRGA 78 Query: 94 SGYFVRQPRRSVIRPVQEPKSLMAIDPEQYAGIHEKVSKYIALRQSGAPRIDLSGMTCAP 153 +G V S+ +P K L + + + + K Q G P +D Sbjct: 79 AGTIVSP---SLPQPAAS-KPLTPMPGQTVSAFLDHDGKAPKPLQLGLPALDA------- 127 Query: 154 ELYAVETLKQAAMRALR-ERPELLTSAMPHNGNATFRQAVARRALHHGMRIDHEEVVVTH 212 + + + LR P L P + + + G+ E+V +T Sbjct: 128 --FPRKVWNRLVGHRLRGSEPARLGYPDPAGYDRLRERIATYLGVSRGVTCLPEQVFITT 185 Query: 213 GCIEALNLALRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELA 272 G L L L +++ GD E P Y L+N +K + +P + I E L+ Sbjct: 186 GLRNTLELTLSSLSTSGDEFWFEDPGYILARPFLQNAAVKVVPVPVDGNGLIVEEGKRLS 245 Query: 273 VRTYGNIKGVVVVPNLQNPLGCIMPDEHKDKLVRLCEELRLPLIEDDAYTELADGSVAPS 332 K +V P+ Q+PLG + E + L+ E +IEDD +E Sbjct: 246 PYA----KFAMVTPSHQSPLGVTLSLERRMALLEWASEAGSWIIEDDYDSEFRYQGRPLP 301 Query: 333 SLKSRDRSGNVIYCASLNKVLAPGMRLGWMNGG-RWHERVKMLKFTHTRANEEWTQVTAA 391 +LKS DR+ VIY + +KV+ PG+RL ++ R + + + Q + A Sbjct: 302 ALKSLDRNDRVIYSGTFSKVMFPGLRLAYVVAPVSAVARFQSVSYNLNAGCPYLFQASVA 361 Query: 392 DFIASPGYDRHLRRLRQLLKEQRERMAESIAAYFPEGTRLNLPNGGVGLWVELPSQVCSQ 451 DFIA + RHL+++R L E+R + + R++L GG+ + +L Sbjct: 362 DFIAEGHFSRHLKKMRSLYAERRLVTQQVFQEVLGDRIRIDLRPGGLHMLAKLGEHENDV 421 Query: 452 QLFERALSEGVGVSP 466 L ++A G+ + P Sbjct: 422 LLADKAREAGLALHP 436 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,139,226 Number of extensions: 44512 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 7 Length of query: 509 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 422 Effective length of database: 899,382 Effective search space: 379539204 Effective search space used: 379539204 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)