BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1602.p (499 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 91 2e-19 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 87 2e-18 gi|152982285|ref|YP_001352393.1| diguanylate cyclase [Janthinoba... 86 8e-18 gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [... 84 1e-17 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 84 2e-17 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 12/175 (6%) Query: 317 LVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVEELNR---LERKGPFPVSVIVADL 373 +VAL DITA K+ E+ LEF D LT L NR+ + + L++ + P+ + DL Sbjct: 499 VVALYDITATKRYESELEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNHPIWIAFVDL 558 Query: 374 NGLKEINDELGHAAGDGLLRRVGEVLAKAVERPGSVARTGGDEFAILLPATDERG----- 428 + K +ND LGH AGD LL+ + E L AV +V+R GGDEF ++LP + G Sbjct: 559 DRFKFVNDTLGHQAGDLLLKAIAERLQHAVRDTDTVSRMGGDEFVLILPERVDAGLSTGI 618 Query: 429 CQVLMEQIEKLVEVNNQYYSGMPLSLSMGAAT-AAPGERLEQVVQRADSLMYEAK 482 Q +M+ I + + + + +S S+G A G E++++ AD MY AK Sbjct: 619 VQRIMDGIAQPLTIEGHEFF---ISSSIGVAVYPNDGVTPEELIKHADIAMYRAK 670 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 327 KKAEAYLEFLGKHDELTKLHNRAYMVEELNRLE----RKGPFPVSVIVADLNGLKEINDE 382 +KA E L + D LT NR Y E+ LE R+ P+SVI D++ K+IND Sbjct: 435 RKARDEAERLSRVDALTGAFNRRYF-NEVAALEFAKVRRLHQPLSVISFDIDLFKQINDN 493 Query: 383 LGHAAGDGLLRRVGEVLAKAVERPGSVARTGGDEFAILLPATDERGCQVLMEQIEKLVEV 442 GHAAGD +++ V AV VAR GG+EFAILLP + E++ +LV Sbjct: 494 YGHAAGDEVIKAAARVSRNAVREIDFVARIGGEEFAILLPGSTIEQAAATAERLRELVIA 553 Query: 443 NNQYYSG--MPLSLSMGAATAAPGER-LEQVVQRADSLMYEAKH 483 Y G + + S G A ++ E ++QRAD +MY AK+ Sbjct: 554 EQVSYQGKLLAFTASFGVAQLKDSDQSFEALLQRADEMMYRAKN 597 >gi|152982285|ref|YP_001352393.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 300 Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 14/191 (7%) Query: 311 DNWDLVLVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVEELN----RLERKGPFPV 366 D+ ++VL ++I+ R E L L D+LT L NR + +L L R P Sbjct: 113 DDEEVVLWVASNISERHILEGKLRELSDTDQLTGLFNRRKLEHDLTLHYESLLRYS-VPT 171 Query: 367 SVIVADLNGLKEINDELGHAAGDGLLRRVGEVLAKAVERPGSVARTGGDEFAILLPATDE 426 SV + DL+ LK+IND GH AGD +++ V ++ A+ + + R GGDEF I LP T+ Sbjct: 172 SVFIFDLDNLKKINDTKGHHAGDEIIQAVADICRSAIRKADTACRFGGDEFVIALPNTEL 231 Query: 427 RGCQVLMEQIEKLV--EVNNQYYSGMPLSLSMGAATAAPGER-LEQVVQRADSLMYEAKH 483 L E++ E++ ++ S+G + P +R E ++RAD +YEAK Sbjct: 232 EQAMQLAERLHDRFRKELSRFSVGDTVVTASIGVTSMVPEDRSYEDTLKRADRALYEAK- 290 Query: 484 HYYATAPGQDR 494 + G+DR Sbjct: 291 -----SMGKDR 296 >gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [Janthinobacterium sp. Marseille] Length = 719 Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 93/181 (51%), Gaps = 13/181 (7%) Query: 312 NWDLVLVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMV----EELNRLERKGPFPVS 367 N L + L DIT RK +A L + D LT L NR ++ E + R R G P++ Sbjct: 532 NGYLFIAFLHDITERKLLQASLMGMALKDPLTDLPNRRALIQRLPESIARAARLGK-PLA 590 Query: 368 VIVADLNGLKEINDELGHAAGDGLLRRVGEVLAKAVERPGSVARTGGDEFAILLPATDER 427 V+ DL+G K +ND GH AGD LLR + + L AV +VAR GDEF I+L + Sbjct: 591 VLFLDLDGFKGVNDGYGHEAGDELLRTIAQRLLGAVRTTDTVARLAGDEFVIVLEMLN-- 648 Query: 428 GCQVLMEQIEKLVEVNNQYYS----GMPLSLSMGAATAAPGERL--EQVVQRADSLMYEA 481 G M+ +K++ Q ++ + +S S+G A P + EQ++ AD MY A Sbjct: 649 GDSDAMDVADKILHTLQQPFTLTAATVTISASIGIAMHWPEDHTTPEQLITLADGAMYAA 708 Query: 482 K 482 K Sbjct: 709 K 709 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 86/346 (24%), Positives = 146/346 (42%), Gaps = 54/346 (15%) Query: 151 ESWDYVLLAIENVTERETARKKLSRSENYARGLFEYSPISLWVEDFSAVKRLFNDLHRIG 210 ++WD + I++VTER+ A + L +E R +FE +A++ ++ G Sbjct: 121 KAWDILEGFIQDVTERKQADEALREAERRYRSIFE-----------NAIEGIYQSTPSDG 169 Query: 211 ITDFRTFTDVHPEFVERCMQEIRVIDVNLQTLSMFGAPDKATLLSRLSDVFRDDMRPHFN 270 + V+P M+G L+S L D+ D + + + Sbjct: 170 ------YLAVNPALAR-----------------MYGYDSPQALISTLRDI---DNQVYVD 203 Query: 271 EQLIELWNGNLLHHREVVNYSL-----SGEALHVHLQFSVFPGHEDNWDLVLVALTDITA 325 Q + + H V N+ +GE + + + + IT Sbjct: 204 PQRRLEFKRLMAKHGVVTNFESRVHRRNGEVIWISENARSVYNSDGTLLFFEGTVEAITE 263 Query: 326 RKKAEAYLEFLGKHDELTKLHNRAYMVEELNRL----ERKGPFPVSVIVADLNGLKEIND 381 RK EA ++F HD LT L NR + + + + ER G ++ DL+ K IND Sbjct: 264 RKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKL-TAIAFLDLDQFKFIND 322 Query: 382 ELGHAAGDGLLRRVGEVLAKAVERPGSVARTGGDEFAILLPATDERGCQVLMEQIEKLVE 441 LGH GD LL+ + L + +VAR GGDEF +LL TD+ + + +++++ Sbjct: 323 SLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLL--TDQPNEEAITHTMQRVLH 380 Query: 442 VNNQYYSGMPLSLSMGAA---TAAP--GERLEQVVQRADSLMYEAK 482 +Q + L + + T P G E +++ ADS MY+AK Sbjct: 381 EVSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAK 426 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,158,971 Number of extensions: 47510 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 29 Length of query: 499 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 412 Effective length of database: 899,382 Effective search space: 370545384 Effective search space used: 370545384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)