BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1600.p
         (286 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979906|ref|YP_001353836.1| phosphatidylserine synthase [Ja...   422   e-120
gi|152981807|ref|YP_001354879.1| phosphatidylserine synthase [Ja...    64   8e-12

>gi|152979906|ref|YP_001353836.1| phosphatidylserine synthase
           [Janthinobacterium sp. Marseille]
          Length = 295

 Score =  422 bits (1086), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/293 (74%), Positives = 240/293 (81%), Gaps = 10/293 (3%)

Query: 1   MPTFRRRKAKPG-IPF--PKSL------RKPKAAQLDDAGQVVTRRRSRGIYLLPNAFTT 51
           M +F RRKAK   +P+  P+ L       +  +A+  D        R RGIYLLPNAFTT
Sbjct: 1   MSSFNRRKAKNSKVPYAKPRPLGRLARGNQSLSAETQDVAAPRPTLRRRGIYLLPNAFTT 60

Query: 52  AALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSEFGAQYDSLSDMVS 111
           A LFCGFYAIVMAM+ KFDYA+IAIF AMVLD++DGRVAR+TNTQSEFGAQYDSL+DMVS
Sbjct: 61  AGLFCGFYAIVMAMSQKFDYAAIAIFAAMVLDAIDGRVARLTNTQSEFGAQYDSLADMVS 120

Query: 112 FGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVVDKRYFQGLPSPAAA 171
           FGAAPALVVY W+L+ MGKLGWLAAFVYCAGGALRLARFNTNIAVVDKRYFQGLPSPAAA
Sbjct: 121 FGAAPALVVYVWALQDMGKLGWLAAFVYCAGGALRLARFNTNIAVVDKRYFQGLPSPAAA 180

Query: 172 ALVAGFVWLMDDLRFAGTDLSWYGWVITLYAGITMVTNVPFYSFKDVNFRKPVPFIAALL 231
           ALVAGF+WLM DL FAG DLSW  W ITLYAG+TMVTNVPFYSFKD+NFRK VPFI   L
Sbjct: 181 ALVAGFIWLMQDLGFAGPDLSWIAWGITLYAGLTMVTNVPFYSFKDINFRKSVPFIGIFL 240

Query: 232 VVVALVLISSDPSKVLFGLFVLYGLSGYAVYIWRRIKGKPV-SIVQTEDEHGD 283
           +V+A V++SSDP KVLFGLFVLYGLSGY VY WR  KGKPV SIVQTE E  D
Sbjct: 241 IVLAFVVVSSDPPKVLFGLFVLYGLSGYCVYFWRMAKGKPVSSIVQTEPEPHD 293


>gi|152981807|ref|YP_001354879.1| phosphatidylserine synthase
           [Janthinobacterium sp. Marseille]
          Length = 210

 Score = 64.3 bits (155), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 19/165 (11%)

Query: 32  QVVTRRRS----RGIYLLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVA-------M 80
           Q  T R+     RG +L  + FT     CG  A+  AM     ++    + A        
Sbjct: 3   QTKTPRKHFSMLRGFHL-ADFFTLGNAACGVAAVFFAMLYMASHSLTHFYAAAAMAPAAF 61

Query: 81  VLDSLDGRVARMTNTQSEFGAQYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYC 140
           + D LDGR+AR     S  G + DSL+D++SFG AP  + +   L   G   W+A   + 
Sbjct: 62  IFDVLDGRIARWRRQHSAMGRELDSLADVISFGLAPVTLGFAAGLT--GGWDWVAMIYFV 119

Query: 141 AGGALRLARFNTNIAVVDK-----RYFQGLPSPAAAALVAGFVWL 180
             G  RLAR+N     + +      YF+G P P +  +     WL
Sbjct: 120 CCGVSRLARYNVTAESLSEGADKVAYFEGTPIPTSVIITGILAWL 164


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 677,029
Number of extensions: 26516
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 204
Effective length of database: 917,867
Effective search space: 187244868
Effective search space used: 187244868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)