BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1597.p
         (270 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980870|ref|YP_001353837.1| hypothetical protein mma_2147 [...   290   8e-80

>gi|152980870|ref|YP_001353837.1| hypothetical protein mma_2147
           [Janthinobacterium sp. Marseille]
          Length = 249

 Score =  290 bits (741), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 158/259 (61%), Positives = 184/259 (71%), Gaps = 16/259 (6%)

Query: 12  LLATACVAAQAQTPAQQAPLPAPTSVPTTGTLVVIPANGEITVPNDQAHVTLQVEEQDKD 71
           LLA  CVAA A   AQ    PAP  V TTGTLV++PA GE+   ND+A +TL VEEQDKD
Sbjct: 7   LLALGCVAASATAFAQS---PAP--VQTTGTLVIVPAYGEVKHANDEARLTLMVEEQDKD 61

Query: 72  KAAAASRVNQKMKQGIELLKRQDPQAELKSYGYYTYAVYGEPPQVSGSPARVPPKARPVV 131
           KAAAASRVNQKMKQG E++++ DPQA L + GYYTYAVY E         R   KAR   
Sbjct: 62  KAAAASRVNQKMKQGTEIVRKADPQAVLSTRGYYTYAVYPE------DQPRQSNKARQPT 115

Query: 132 AWRVGQYLEMNTQNLAALPRTVSAVQSVMNLTGLQFGLSPTAAKKLDAALVNATYRNLEE 191
           AWRVGQYLE+ T NL+ALP+TVSA Q V+ L GLQFGL+   AKKLDA  ++ATY+NL E
Sbjct: 116 AWRVGQYLEVKTTNLSALPKTVSAAQGVLALNGLQFGLTDATAKKLDAERIDATYKNLTE 175

Query: 192 RIGFIASAMHRNATDAVIDTVDFEGSGNYVPSAVAAAPMAKSAMMRSDMVQENASVAEPS 251
           R   IA AM RN  DAV+DTVDFEGSGNY    +AAAP     MMR+ M  + A V EPS
Sbjct: 176 RTAAIARAMGRNPADAVMDTVDFEGSGNYAQE-MAAAP----KMMRASMAADAAPVEEPS 230

Query: 252 FEPGESTVTMRLVGKVRFR 270
           FEPGE+T+ MR+VGKV+FR
Sbjct: 231 FEPGETTLNMRVVGKVKFR 249


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.126    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 453,845
Number of extensions: 13958
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 188
Effective length of database: 917,867
Effective search space: 172558996
Effective search space used: 172558996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)