BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1596.p
         (338 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980253|ref|YP_001353838.1| ketol-acid reductoisomerase [Ja...   613   e-177

>gi|152980253|ref|YP_001353838.1| ketol-acid reductoisomerase
           [Janthinobacterium sp. Marseille]
          Length = 338

 Score =  613 bits (1580), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 293/338 (86%), Positives = 312/338 (92%)

Query: 1   MKVFYDKDADLSLIKNKNVTIIGYGSQGHAHALNLKDSGVKVTVGLRKGGASWNKAEQAG 60
           MKVFYDKD DLSLIK KNV IIGYGSQGHAHA NL DSGVKVTVGLRKGGASW+K + AG
Sbjct: 1   MKVFYDKDCDLSLIKGKNVAIIGYGSQGHAHAQNLNDSGVKVTVGLRKGGASWDKVKNAG 60

Query: 61  LKVAEVNEAVKDADVIMILLPDENIGQVYAENVAPFAKQGATVAFAHGFNIHYGQVVPRA 120
           L VAEVN+AVK ADVIMILLPDENI QVY ENVAP+AKQGA +AFAHGFN+HYGQVVPRA
Sbjct: 61  LNVAEVNDAVKAADVIMILLPDENIAQVYNENVAPYAKQGAVLAFAHGFNVHYGQVVPRA 120

Query: 121 DLDIIMIAPKAPGHTVRSTYSQGGGVPHLIAVHQDKSGSARDLALSYATANGGGRAGIIE 180
           DLD+IMIAPKAPGHTVR TYSQGGGVPHLIAV+QDKSG ARD+ALSYA ANGGGRAGIIE
Sbjct: 121 DLDVIMIAPKAPGHTVRGTYSQGGGVPHLIAVYQDKSGVARDIALSYAMANGGGRAGIIE 180

Query: 181 TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240
           TNFREETETDLFGEQAVLCGG VELIKAGFETL EAGYAPEMAYFECLHELKLIVDLIYE
Sbjct: 181 TNFREETETDLFGEQAVLCGGAVELIKAGFETLTEAGYAPEMAYFECLHELKLIVDLIYE 240

Query: 241 GGIANMNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPT 300
           GGIANMNYSISNNAEYGEYVTGP+V+  ++K AM++ L+DIQTGEYAKSFILENKAGAPT
Sbjct: 241 GGIANMNYSISNNAEYGEYVTGPKVVTEDTKNAMRQCLKDIQTGEYAKSFILENKAGAPT 300

Query: 301 LMSRRRINAEHQIEIVGEKLRAMMPWIKANKLVDQSKN 338
           L+SRRR+ AEHQIE VG KLRAMMPWI  NKLVDQ+KN
Sbjct: 301 LISRRRLTAEHQIEEVGAKLRAMMPWIAKNKLVDQTKN 338


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 809,737
Number of extensions: 34575
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 254
Effective length of database: 910,473
Effective search space: 231260142
Effective search space used: 231260142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)