BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1594.p (572 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980052|ref|YP_001353840.1| acetolactate synthase large sub... 1080 0.0 gi|152981070|ref|YP_001352069.1| glyoxylate carboligase [Janthin... 299 3e-82 gi|152980239|ref|YP_001352089.1| putative oxalyl-CoA decarboxyla... 150 3e-37 >gi|152980052|ref|YP_001353840.1| acetolactate synthase large subunit [Janthinobacterium sp. Marseille] Length = 583 Score = 1080 bits (2793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/569 (89%), Positives = 535/569 (94%) Query: 4 EHLSGADILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAADAY 63 E L+GA+I+VRCLAEEGVEHVFGYPGGAVLYIYDAIF KFQHILVRHEQAAVHAADAY Sbjct: 15 EELTGAEIVVRCLAEEGVEHVFGYPGGAVLYIYDAIFNHSKFQHILVRHEQAAVHAADAY 74 Query: 64 SRSSQKVGVAIVTSGPGVTNAVTGLATAYMDSIPMVVISGQVPSTAIGQDAFQECDTVGI 123 SRSS K+GV +VTSGPGVTNAVTGLATAYMDSIPM+VISGQVPS AIG DAFQECDTVGI Sbjct: 75 SRSSNKIGVCLVTSGPGVTNAVTGLATAYMDSIPMIVISGQVPSHAIGLDAFQECDTVGI 134 Query: 124 TRPCVKHNFLVKDVKDLAETVKKAFFIATTGRPGPVLVDIPKDITMHTCAYEYPKAVEMR 183 TRPCVKHNFLVKDVKDLA T+KKAFFIATTGRPGPVL+DIPKDITMH C +EYPK VEMR Sbjct: 135 TRPCVKHNFLVKDVKDLAATMKKAFFIATTGRPGPVLIDIPKDITMHKCVFEYPKEVEMR 194 Query: 184 SYKPVDKGHSGQIRKALQLLLTAERPMIYTGGGIILANAAPELNKLVDRLGYPCTNTLMG 243 SYKPVDKGHSGQIRKA+QLLL AERPMIYTGGG+ILANA+ ELN+LVDRLGYPCTNTLMG Sbjct: 195 SYKPVDKGHSGQIRKAVQLLLQAERPMIYTGGGVILANASEELNRLVDRLGYPCTNTLMG 254 Query: 244 LGAYRSSSDKFVGMPGMHGTFEANMAMQHCDVLIAIGARFDDRVIGNPKHFASHARKIIH 303 LGAY++SSDKFVGMPGMHGT+EANMAMQH DV+IAIGARFDDRVIGNPKHF++ RKIIH Sbjct: 255 LGAYKASSDKFVGMPGMHGTYEANMAMQHSDVMIAIGARFDDRVIGNPKHFSATPRKIIH 314 Query: 304 IDIDPSSISKRVKVDIPIVGNVKDVLQELLAQLDSAETRQNGAALDAWWKQINEWRKRDC 363 IDIDPSSISKRVKVDIPIVGNVK+VL ELLAQLD+A+ + N AL AWWKQINEWRKRDC Sbjct: 315 IDIDPSSISKRVKVDIPIVGNVKEVLVELLAQLDAADAKPNSVALSAWWKQINEWRKRDC 374 Query: 364 LKFATSDEFIKPQSVVQKVWEVTKGDAFITSDVGQHQMWAAQYYGFDKPRRWINSGGLGT 423 LKF S E IKPQSV+QKVWEVTKGDAFITSDVGQHQMWAAQYY F+KPRRWINSGGLGT Sbjct: 375 LKFTDSTEVIKPQSVIQKVWEVTKGDAFITSDVGQHQMWAAQYYPFNKPRRWINSGGLGT 434 Query: 424 MGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLGMVR 483 MGVGLPYAMGVQ ANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLGMVR Sbjct: 435 MGVGLPYAMGVQKANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLGMVR 494 Query: 484 QWQQIDYGSRYSESYMDSLPDFNKLAESYGHVGMKIEKPGDVDGALREAFAMKDRLVFMN 543 QWQQ++YGSRYSESYMDSLPDFNKL ESYGHVGMKIE P DVDGAL+EAF MKDRLVFMN Sbjct: 495 QWQQLEYGSRYSESYMDSLPDFNKLVESYGHVGMKIENPADVDGALKEAFDMKDRLVFMN 554 Query: 544 FITDQTENVWPMVKAGKGLTEMLLGSEDL 572 FITDQTENVWPMVK GKGLTEMLLGSEDL Sbjct: 555 FITDQTENVWPMVKTGKGLTEMLLGSEDL 583 >gi|152981070|ref|YP_001352069.1| glyoxylate carboligase [Janthinobacterium sp. Marseille] Length = 582 Score = 299 bits (766), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 184/542 (33%), Positives = 290/542 (53%), Gaps = 22/542 (4%) Query: 6 LSGADILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAADAYSR 65 ++ A V + +EG++ FG PG A+ Y A+ KQ +HIL RH + A H A+ Y+R Sbjct: 4 MTAAQAAVWVMQKEGIDQAFGVPGAAINPFYSAMQKQGTIKHILARHVEGATHMAEGYTR 63 Query: 66 S-SQKVGVAIVTSGPGVTNAVTGLATAYMDSIPMVVISGQVPSTAIGQDAFQECDTVGIT 124 + S +GVA+ TSGPG T+ VTGL +A DSIP++ ++GQ P + ++ FQ D I+ Sbjct: 64 AKSGNIGVALATSGPGGTDMVTGLYSAIADSIPILCVTGQAPRARLHKEDFQAVDIESIS 123 Query: 125 RPCVKHNFLVKDVKDLAETVKKAFFIATTGRPGPVLVDIPKDITMHTCAYEYPKAVEMRS 184 +P K + +V++ + + ++AF I +GRPGPVL+D+P D+ + ++ + Sbjct: 124 KPVTKWSVMVREPALVPQVFQQAFHIMRSGRPGPVLIDLPFDVQVAEIEFDPDLYEPLPV 183 Query: 185 YKPVDKGHSGQIRKALQLLLTAERPMIYTGGGIILANAAPELNKLVDRLGYPCTNTLMGL 244 YKP + QI A+ +L AERP++ +GGG+I ANA P + + + + P TLMG Sbjct: 184 YKP--QATRKQIEAAIAMLNAAERPLLISGGGVINANATPLMLEFAELVNVPVVPTLMGW 241 Query: 245 GAYRSSSDKFVGMPGMHGTFE-ANMAMQHCDVLIAIGARFDDRVIGNPKHFASHARKIIH 303 G VGM G+ + N M D IG R+ +R G+ F + RK +H Sbjct: 242 GTVPDDHPLMVGMVGLQTSHRYGNATMLASDFAFGIGNRWANRFTGSIDVF-TKDRKFVH 300 Query: 304 IDIDPSSISKRVKVDIPIVGNVKDVLQ---ELLAQLDSAETRQNGAALDAWWKQINEWRK 360 IDI+P+ I + D+ I + L+ E+ +L +A +N DAW + E RK Sbjct: 301 IDIEPTQIGRVFGPDLGITSDAGAALKLMIEVAKELKAAGKLKN---RDAWLAECQE-RK 356 Query: 361 RDCLKFATSD-EFIKPQSVVQKVWEVTKGDAFITSDVGQHQMWAAQYYGFDKPRRWINSG 419 R L+ D IKPQ V Q++ V A S++G Q+ A Q+ K R WIN G Sbjct: 357 RTMLRKTDFDVTPIKPQRVYQEMNAVFGKTARYISNIGLSQIAAGQFLHVYKERNWINCG 416 Query: 420 GLGTMGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFL 479 G +G +P A+GV+ A+P + + ITG+ Q I+ELA Q++L +L+NN +L Sbjct: 417 QAGPLGWTIPAALGVRAADPTSEIVAITGDYDFQFLIEELAAGAQFNLPYIHVLVNNSYL 476 Query: 480 GMVRQWQQ---IDYGSRYSESYMDSLP------DFNKLAESYGHVGMKIEKPGDVDGALR 530 G++RQ Q+ +DY + ++S D K+ E G +++ P D+ AL+ Sbjct: 477 GLIRQAQRMFTMDYCVSLAFDNINSTENASYGVDHVKVTEGLGCKAIRVYNPDDIAPALK 536 Query: 531 EA 532 +A Sbjct: 537 KA 538 >gi|152980239|ref|YP_001352089.1| putative oxalyl-CoA decarboxylase [Janthinobacterium sp. Marseille] Length = 570 Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 137/566 (24%), Positives = 246/566 (43%), Gaps = 43/566 (7%) Query: 4 EHLSGADILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAADAY 63 E G +L+ L G+ +++G G V I +++ + R+EQ A +AA Sbjct: 13 ELTDGFHLLMEALEMNGITNIYGLLGIPVTEI-GRMWQARGNKFFSFRNEQNAGYAASVA 71 Query: 64 SRSSQKVGVAIVTSGPGVTNAVTGLATAYMDSIPMVVISGQVPSTAIG--QDAFQECDTV 121 ++K GV + S PG N +T LA A + PM++ISG + Q ++E D + Sbjct: 72 GYLTKKPGVCVTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGDYEEMDQL 131 Query: 122 GITRPCVKHNFLVKDVKDLAETVKKAFFIATTGRPGPVLVDIPKDITMHTCAYEYPKAVE 181 I RP K +F + +D+ V +A A +GRPG V +DIP + T + E + Sbjct: 132 NIARPHCKASFRINRTEDIGVAVVRAIRTALSGRPGGVYLDIPARLFSTTMSAEEG---Q 188 Query: 182 MRSYKPVDKGHS-----GQIRKALQLLLTAERPMIYTGGGIILANAAPELNKLVDRLGYP 236 + PVD + + +A++L+ A++P+I G G A ++ L++ G P Sbjct: 189 KSLFVPVDPAPAQLPAPSAVSRAVELIKGAKKPLILLGKGAAYAQCDADIKALIEETGIP 248 Query: 237 CTNTLMGLGAYRSSSDKFVGMPGMHGTFEANMAMQHCDVLIAIGARFDDRVIGNPKHFAS 296 T M G + + +M +Q DV+I IGAR + + Sbjct: 249 FTPMSMAKGLVSDTHPQCAAA-------ARSMVLQESDVVILIGARLNWLLAHGKGKTWG 301 Query: 297 HARKIIHIDIDPSSISKRVKVDIPIVGNVKDVLQELLAQLDSAETRQNGAALDAWWKQIN 356 A+K + IDI + I V + P++G+++ + L A L A A W I Sbjct: 302 GAKKFVQIDIQANEIDSNVPIAAPLIGDIESCVNALRAGLKGA------AKPTEWMSAIA 355 Query: 357 E----WRKRDCLKFATSDEFIKPQSVVQKVWEVTKGDAFIT------SDVGQHQMWAAQY 406 E + + K +T+ + + + + +V K IT + + +M QY Sbjct: 356 ERATGTKAKLATKLSTATPVMNYFNSLGAIRDVLKNYPDITLVNEGANTLDNARMVIDQY 415 Query: 407 YGFDKPRRWINSGGLGTMGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYH 466 PR+ +++G G MG+G+ A+ + VA I G+++ E T +Y+ Sbjct: 416 L----PRKRVDTGTWGVMGIGMGSAVAAAVETGKPVVA-ICGDSAFGFSAMEYETITRYN 470 Query: 467 LTPKIILLNNRFLGMVRQWQQIDYGSRYSESYMDSLPDFNKLAESYGHVGMKIEKPGDVD 526 L +I++NN G + + + + + S + +++ + + G G++ E P + Sbjct: 471 LPVTVIIMNN---GGIYRGDEANPEHQVSCMIFNPKTKYDQFSVALGGEGVRAETPEALA 527 Query: 527 GALREAFAMKDRLVFMNFITDQTENV 552 AL EA + ++ I D V Sbjct: 528 KAL-EASLKSGKPTIIDAIIDPAAGV 552 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,365,443 Number of extensions: 57229 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 3 Length of query: 572 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 484 Effective length of database: 895,685 Effective search space: 433511540 Effective search space used: 433511540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)