BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1591.p
         (135 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980868|ref|YP_001353842.1| hypothetical protein mma_2152 [...   104   2e-24

>gi|152980868|ref|YP_001353842.1| hypothetical protein mma_2152
           [Janthinobacterium sp. Marseille]
          Length = 135

 Score =  104 bits (259), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 86/135 (63%), Gaps = 6/135 (4%)

Query: 1   MNNKEMQFAYKVKLALDANLDTLSDDTLQSLAAARRVALARKKQ---APLHVQVKQPVLA 57
           M  KE+  AYK++ ALD + + +S +T + LA+AR +AL+RKKQ   AP      QP LA
Sbjct: 1   MKTKELDLAYKLRHALDESANQVSANTAERLASARNIALSRKKQGITAPAFA--AQPALA 58

Query: 58  GALGGTMMSPEKPSWWSRLGVAAPLLAGIILFAGIYQHENAKRVSYLADIDAAVLSDELP 117
            + GG   S  + +W  R+G+  PL A +    G YQ E  +++   A IDA VL+D+LP
Sbjct: 59  -SYGGAPSSDHRWAWLGRMGLLVPLAALVFGLVGAYQFEQQQQIMDSASIDAEVLTDDLP 117

Query: 118 LSAYLDHGFNAYLAE 132
           +SAYLDHGF+A+LA+
Sbjct: 118 ISAYLDHGFDAFLAK 132


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 266,508
Number of extensions: 9401
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 61
Effective length of database: 947,443
Effective search space: 57794023
Effective search space used: 57794023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)