BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1590.p
         (282 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982361|ref|YP_001353843.1| hypothetical protein mma_2153 [...   145   3e-36

>gi|152982361|ref|YP_001353843.1| hypothetical protein mma_2153
           [Janthinobacterium sp. Marseille]
          Length = 236

 Score =  145 bits (366), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 120/219 (54%), Gaps = 17/219 (7%)

Query: 32  AWTVAQNSSSEAPAPTTATPTAASTTAAAAATTPAAPV---AAHPGKSTNATKSTAR--- 85
           AW  + N+ S     TT    + + T A  A   +AP    +A P  +TN  K  A+   
Sbjct: 3   AWIFSLNTKSLGKITTTLFALSLAYTGATQAVPSSAPTFAPSATPATATNP-KPIAKAIP 61

Query: 86  ---KSENKLAWANLSPAQHQALEPLTGEWPRMSELQKEKWLEIGKRYARMKPEEQARLHE 142
              K+ NK  W  L+PAQ QAL PL  +W ++   +KEKWLE+  R+  M P EQ R+ E
Sbjct: 62  PTSKTTNKSEWNKLTPAQKQALAPLAADWGKLDSFRKEKWLELANRFTSMTPPEQERMQE 121

Query: 143 RMRDWVKLTPAERSTARTNYARAKKLDAEEKHEQWAKYQQLSAEQKKKLAEAKLPKRVAK 202
           RMRDWVKLTP +R  AR NY RAKKL+AE+K +QW +YQQLS E+KK+LAE   P++   
Sbjct: 122 RMRDWVKLTPDQRRLARENYNRAKKLNAEQKAKQWEEYQQLSDEKKKQLAETATPQKRIV 181

Query: 203 LPTSPSAAAPTIQLPAEAMDRPLPVVPAPTPAAAPAPAL 241
            P   S      Q  A+       V   PTPA  P P L
Sbjct: 182 NPPRLSNGQTNGQTQAK-------VAVKPTPAKQPVPRL 213


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.308    0.118    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 383,221
Number of extensions: 11250
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 200
Effective length of database: 917,867
Effective search space: 183573400
Effective search space used: 183573400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)