BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1589.p
         (176 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980867|ref|YP_001353844.1| hypothetical protein mma_2154 [...   165   2e-42

>gi|152980867|ref|YP_001353844.1| hypothetical protein mma_2154
           [Janthinobacterium sp. Marseille]
          Length = 165

 Score =  165 bits (417), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 111/154 (72%)

Query: 6   TPSLRRRLSSMLYESMLLFGVLFMSGWLFSTLLQQRNALYLRHALEFWLFLVLGVYFIWF 65
           TP+++RRL++M+YE +LLFGV+ ++  LFST+ QQR+ALYLRHAL++WLF V+G YF+WF
Sbjct: 8   TPTIKRRLTTMMYEGVLLFGVVAIAALLFSTIFQQRHALYLRHALQYWLFFVVGAYFVWF 67

Query: 66  WTHGGQTLAMKTWRFKVVDRAGQPLGRGRAALRFLLAWLWILPGLALASVLRGHPWLLIL 125
           W H GQTL MKTWR +++    Q L    A  R+ LAWLW LPGLA+A  L    W  + 
Sbjct: 68  WIHSGQTLPMKTWRIRLLTVDDQTLSFKHAVARYFLAWLWFLPGLAIAWALDAKAWTSVA 127

Query: 126 IPAANIVLWALTSRLDPRGQFLHDRLAGTRLVDV 159
           I  ANI  WAL + + P  QFLHDR+AGT+LV +
Sbjct: 128 IVCANIAAWALAAYIHPSRQFLHDRIAGTKLVQL 161


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.140    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 373,707
Number of extensions: 12664
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 99
Effective length of database: 936,352
Effective search space: 92698848
Effective search space used: 92698848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)