BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1587.p
         (122 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982865|ref|YP_001352965.1| hypothetical protein mma_1275 [...    59   6e-11

>gi|152982865|ref|YP_001352965.1| hypothetical protein mma_1275
           [Janthinobacterium sp. Marseille]
          Length = 101

 Score = 59.3 bits (142), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 20/115 (17%)

Query: 8   MNKISKLLVGLTVSVAAISMLAACQKKEEPG-PAEALGKKIDGAVQDAGKKLDEVTGQAK 66
           MN    LL  L  SV  I+ LAACQKKEE G PAE  G+KID A   AG+K+DE      
Sbjct: 1   MNSSKTLLSILAASVL-IAGLAACQKKEEVGGPAETTGQKIDQAAAAAGQKIDE------ 53

Query: 67  DQTTESGSKLDSALDKAKADAQEAYEKTKEGAKDLAQKTGEKMQEAGQKLQDASK 121
                       A  K  A+A++A     +GA ++    G+K++E G K+QD++K
Sbjct: 54  ------------AAAKVSAEAEKAKTDISQGAANMTDAAGKKVEEVGVKMQDSAK 96


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.301    0.120    0.305 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 221,385
Number of extensions: 6691
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 50
Effective length of database: 954,837
Effective search space: 47741850
Effective search space used: 47741850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 124 (52.4 bits)