BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1586.p
         (281 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981254|ref|YP_001352964.1| hypothetical protein mma_1274 [...   332   1e-92

>gi|152981254|ref|YP_001352964.1| hypothetical protein mma_1274
           [Janthinobacterium sp. Marseille]
          Length = 277

 Score =  332 bits (852), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/258 (64%), Positives = 198/258 (76%), Gaps = 2/258 (0%)

Query: 16  LRSGALSCLKETSPDAKCTFVRALRAAWQAGDLPLESADLAASEAGNGIPGRPAQPELVP 75
           LR+ AL    +T    K   V  L  +W AG L L++   A+ +A   IPGRPA PEL+ 
Sbjct: 14  LRALALYWAGQTDAALKAAGVIELAKSWHAGQLSLDTD--ASLQAQTAIPGRPALPELIS 71

Query: 76  PLQVKHRSMGTPEGRAALIHALAHIEFNAINLALDAVWRFAGMPRDFYADWLQVADEEAY 135
           P  VKHRSM T EGRAALIHAL HIEFNAINLALDA+WRFAGMP  +YADWLQVA EEA 
Sbjct: 72  PKFVKHRSMRTDEGRAALIHALTHIEFNAINLALDAIWRFAGMPSAYYADWLQVAGEEAL 131

Query: 136 HFRLLADHLKTLGHAYGDFTAHNALWDMAESTKGDVLARIALVPRTLEARGLDAAPPVRA 195
           H+ LLA HL+ LGH YGDF AHN++W+MA+ T GD+LAR+ALVPRTLEARGLDA P  RA
Sbjct: 132 HYSLLAGHLQVLGHRYGDFAAHNSMWEMADKTSGDILARMALVPRTLEARGLDATPLTRA 191

Query: 196 KLAQAGDVAAAEILDIIMRDEVGHVLIGNRWFHWLCEQRQLEPVVTFAELCQRHRAPPLR 255
           KLAQAGD AAAEILDII+RDE+GHV IGN W+  LC++R L+P+ T+A+L   ++ P LR
Sbjct: 192 KLAQAGDQAAAEILDIILRDEIGHVAIGNHWYKVLCDERGLDPLTTYADLALHYKVPVLR 251

Query: 256 GPFNLEARRAAGFSDEEM 273
           GPFNL+ARRAAGFS+ E+
Sbjct: 252 GPFNLDARRAAGFSEPEL 269


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 698,898
Number of extensions: 29505
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 199
Effective length of database: 917,867
Effective search space: 182655533
Effective search space used: 182655533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)