BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1582.p
         (240 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981396|ref|YP_001353640.1| ribosomal small subunit pseudou...   394   e-111
gi|152981088|ref|YP_001354188.1| ribosomal large subunit pseudou...    69   2e-13
gi|152981336|ref|YP_001353751.1| pseudouridylate synthase [Janth...    69   3e-13

>gi|152981396|ref|YP_001353640.1| ribosomal small subunit
           pseudouridine synthase A protein [Janthinobacterium sp.
           Marseille]
          Length = 238

 Score =  394 bits (1013), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/237 (79%), Positives = 202/237 (85%)

Query: 1   MAKLTLDRILQSQGFGSRKYCRELIDDGEVSINGEVVDDYRATPDTSGLVLTIFEEEWEY 60
           M+KLTLDRILQSQGFG+RKYCR LI+DGEVSINGE V DYRA  DTS L  TIF+E W Y
Sbjct: 1   MSKLTLDRILQSQGFGTRKYCRNLIEDGEVSINGESVTDYRAAFDTSDLEFTIFDEVWRY 60

Query: 61  REHVYIAINKPPNIECSRKPSHHPGVLTLLPEQFTWRDVQPVGRLDHDTTGLLLMSDDGA 120
           R+HVYI +NKP N ECSRKPSHHPGVLTLLPEQFTWR++QPVGRLDHDTTG+LLMSDDG 
Sbjct: 61  RQHVYIVLNKPANFECSRKPSHHPGVLTLLPEQFTWRELQPVGRLDHDTTGMLLMSDDGP 120

Query: 121 FIHAQSSPKRHVPKVYAATTAEPVTEALIAQLKAGVQLHDEPAPLAATRCRQLGEKLLEI 180
           FIHAQSSPKRH+PKVY ATT +PVT  LIAQL  GVQLHDEPAPLAA  CR LG   LEI
Sbjct: 121 FIHAQSSPKRHIPKVYVATTHDPVTPELIAQLLGGVQLHDEPAPLAAQTCRMLGANELEI 180

Query: 181 VLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLDVLELEEGEWTYLDAQQMALLVP 237
           VLEQGKYHQVKRMLAAAGNHCSALRR AIG L L+ LEL+EGEW YL   Q+ALL P
Sbjct: 181 VLEQGKYHQVKRMLAAAGNHCSALRRVAIGALTLESLELDEGEWAYLTDAQLALLAP 237


>gi|152981088|ref|YP_001354188.1| ribosomal large subunit
           pseudouridine synthase B [Janthinobacterium sp.
           Marseille]
          Length = 546

 Score = 69.3 bits (168), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 102/230 (44%), Gaps = 11/230 (4%)

Query: 6   LDRILQSQGFGSRKYCRELIDDGEVSINGEVVD-DYRATP-DTSGLVLTIFEEEWEYREH 63
           L ++L   G GSR+   ELI  G VS+NGE      R  P D   +   + + +   +  
Sbjct: 186 LHKVLAEAGLGSRRDMEELIIAGRVSVNGEPAHIGQRILPTDQVRINGKLIQRKVSKKPP 245

Query: 64  VYIAINKPPN-IECSRKPSHHPGVLTLLP--EQFTWRDVQPVGRLDHDTTGLLLMSDDGA 120
             +  +KP   I  +  P   P V   LP  +   W     VGRLD +T GLLL +  G 
Sbjct: 246 RVLVYHKPAGEIVSTNDPEGRPSVFDRLPTMKAAKW---LAVGRLDFNTEGLLLFTTSGD 302

Query: 121 FIHAQSSPKRHVPKVYAATTAEPVTEALIAQLKAGVQLHDEPAPLA--ATRCRQLGEKLL 178
             +    P+  + + YA  T   + E +  +L AGV+L D  A  +  A    +   K  
Sbjct: 303 LANRLMHPRYGIDREYAVRTLGELEEGMRQKLLAGVELEDGLAQFSKIADGGGEGVNKWY 362

Query: 179 EIVLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLDVLELEEGEWTYLD 228
            + + +G+  +V+RM  A G   S L RT  G L L    L+ G W  ++
Sbjct: 363 RVTIGEGRNREVRRMFEAIGLTVSRLIRTRYGLLTL-PKNLKRGRWEEME 411


>gi|152981336|ref|YP_001353751.1| pseudouridylate synthase
           [Janthinobacterium sp. Marseille]
          Length = 248

 Score = 68.6 bits (166), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 22/242 (9%)

Query: 4   LTLDRILQSQGFGSRKYCRELIDDGEVSINGEVVDDYRATPDTSGLVLTIFEEEWEYREH 63
           L L + +   G  SR+   E I  G V ++G+VV +  +    +  V    +   E  + 
Sbjct: 5   LRLSKRMSELGLCSRREADEWIARGWVRVDGKVVSELGSKVLPTQRVTVERQAAAEQSKR 64

Query: 64  VYIAINKPPNIECSRKPSHHPGVLTLLPEQFTW--------------RDVQPVGRLDHDT 109
           V + INKP      +    +   + L+     W              R + P GRLD D+
Sbjct: 65  VTVLINKPMGYVSGQAEDGYKPAVALVNASTRWSEDQAATQFHPTQLRSLVPAGRLDIDS 124

Query: 110 TGLLLMSDDGAFIHAQSSPKRHVPKVYAATT--AEP--VTEALIAQLKAGVQLHDEPAPL 165
            GLL+++ DG            V K Y      ++P  + EA + +L  G+ L  +   L
Sbjct: 125 VGLLVLTQDGRIAKHLIGEDTSVEKEYLVRVQYSKPGKLPEADLKRLNHGLMLDGKK--L 182

Query: 166 AATRCRQLGEKLLEIVLEQGKYHQVKRMLAAAGNHCSALRRTAIGGLQLDVLELEEGEWT 225
              + +   E  L  +L +GK  Q++RM    G     L+R  IG ++L   +L  G+W 
Sbjct: 183 LPAKVKWQNEDQLSFILREGKKRQIRRMCDMVGLKVIGLKRVRIGNVKLG--DLPVGQWR 240

Query: 226 YL 227
           YL
Sbjct: 241 YL 242


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 578,170
Number of extensions: 23897
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 159
Effective length of database: 921,564
Effective search space: 146528676
Effective search space used: 146528676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)