BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1577.p (516 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Jan... 663 0.0 gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Jan... 417 e-118 gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Jan... 354 7e-99 gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Jan... 320 1e-88 gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA... 260 2e-70 >gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 448 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/447 (75%), Positives = 375/447 (83%), Gaps = 12/447 (2%) Query: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 MSF+ LGL++ IVRAV+E GYT+PTPIQAQA+PAVL+GGDLLAGAQTGTGKTAGFTLP+L Sbjct: 1 MSFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 QRLST--MPRQKINGHLPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINP 118 RL+T P + PIRAL+L PTRELAAQVEESVR YGKYL L SA IFGGVGINP Sbjct: 61 HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINP 120 Query: 119 QITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAAL 178 QI +LK GVDILVATPGRLLDHMQQGTVNL HIQILVLDEADRMLDMGFI+DIR+VLAAL Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAAL 180 Query: 179 PPKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLA 238 P RQNLLFSATF++EIK LAD LLN+PA IEVARRNSTVE+I QKIHPVDRDKKHPMLA Sbjct: 181 PKNRQNLLFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKKHPMLA 240 Query: 239 HLIKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLT 298 HLIK++ W QVLVFTRTKHGANKLVEQL +DGI+ MAIHGNKSQSART+AL+EFKDG L Sbjct: 241 HLIKSNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQ 300 Query: 299 ALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLL 358 L+ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDE ++L Sbjct: 301 VLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELEML 360 Query: 359 HDIERFIKREIPVEVIAGFEPDPSAKPQPIQLRSGQ--GRHQNGGGRGGQRSAPRKPAAN 416 DIE+ IKR++P EVI GFEPD +AKPQPIQ RS GR G GR + + PA Sbjct: 361 KDIEKLIKRKLPSEVIPGFEPDLNAKPQPIQRRSNDAPGRRPQGQGRNAPAKSAKAPAPK 420 Query: 417 GNGNS-------AAAKPAKPA-SGGNG 435 NG+S + A+PA P SGG G Sbjct: 421 PNGSSRGGFGGNSNARPAAPHRSGGRG 447 >gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 513 Score = 417 bits (1073), Expect = e-118, Method: Compositional matrix adjust. Identities = 218/431 (50%), Positives = 295/431 (68%), Gaps = 6/431 (1%) Query: 3 FSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQR 62 F GL+ EI+RA+S+QGY PTPIQA+A+P VL G D++ AQTGTGKTAGF+LP++Q Sbjct: 38 FEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQL 97 Query: 63 LSTMPRQKIN-GHLPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQIT 121 L + P+RALIL PTRELA QV ++V+ Y ++ PL S +FGGV + PQ Sbjct: 98 LMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTA 157 Query: 122 LLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPPK 181 L+ GV+I++ATPGRLLDH+QQ T+NL QILV+DEADRMLDMGF+ D+++++ LP + Sbjct: 158 ALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 217 Query: 182 RQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHLI 241 RQNL+FSATF+ EIKKLA + L +P IEVAR N+T E + Q ++ V+ K ++++I Sbjct: 218 RQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIVYKVEEGDKGDAVSYII 277 Query: 242 KTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLTALI 301 + KQV+VF+ TK GA++L QL +G+ A AIHG+KSQ+ R AL FK+G + L+ Sbjct: 278 RERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMAALEAFKNGTIEVLV 337 Query: 302 ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLLHDI 361 ATD+AARG+DI +LP V+NYDLP EDYVHRIGRTGRAGA+G+A+SL + LL DI Sbjct: 338 ATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLYSDKDARLLVDI 397 Query: 362 ERFIKREIPVEVIAGFEPDPSAKPQPIQLRSGQGRHQNGGGRGGQR--SAPRKPAANGN- 418 E+ IK + +AGF P + + RS + GRG +R SAPR+ + + Sbjct: 398 EKMIKHKFVPAQLAGFVP-AGNRASERKERSPRRDDSESRGRGSERRESAPREASGGRDP 456 Query: 419 -GNSAAAKPAK 428 SA A P K Sbjct: 457 GSRSAYAAPRK 467 >gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 466 Score = 354 bits (909), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 208/482 (43%), Positives = 277/482 (57%), Gaps = 39/482 (8%) Query: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 M+F +LGL I++A++E GYT+PT +QAQA+PA + G D++ +QTG+GKTA F LP L Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60 Query: 61 QRLSTMPRQKINGHLPI--------------------RALILAPTRELAAQVEESVRQYG 100 + ++ Q G P + L+L PTRELA QV S +YG Sbjct: 61 HKFASEGDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKYG 120 Query: 101 KYLPLTSAC-IFGGVGINPQITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEA 159 ++ A I GG+ Q+ LL + +ILVATPGRL+DHM+ G ++ +QILVLDEA Sbjct: 121 AFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Query: 160 DRMLDMGFIRDIRKVLAALPPKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVE 219 DRMLDMGFI DI K++AA P RQ +LFSAT + +A + + +I++A + E Sbjct: 181 DRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHE 240 Query: 220 VIAQKIHPVDR-DKKHPMLAHLIKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHG 278 I Q +H VD K+ ML HL++ Q +VFT TK A+ + ++L G A A+HG Sbjct: 241 NIKQCVHFVDDLSHKNRMLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHG 300 Query: 279 NKSQSARTKALAEFKDGKLTALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTG 338 + Q AR + L + G++ L+ATD+AARGID+ + HVVNYDLP PEDYVHRIGRTG Sbjct: 301 DMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRTG 360 Query: 339 RAGATGEAVSLVCVDERDLLHDIERFIKREIPVEVIAGFEPDPSAKPQPIQLRSGQGRHQ 398 RAG G AVSLV E + IERFIK+ IPVEVI GFEP SA + + H+ Sbjct: 361 RAGRNGIAVSLVNHAESMNVKRIERFIKQLIPVEVIEGFEPKRSAS-------APRSNHK 413 Query: 399 NGGGR-GGQRSAPRKPAANGNGNSAAAKPAKPASGGNGGNGGQAAKPRPAANGNAARGQG 457 GG + G R KP G +KP P G+ N G PR G R G Sbjct: 414 PGGWKPGDNRGNTAKP-----GQRTFSKPNAPRKDGSSFNKG----PRTGDAGATRRPFG 464 Query: 458 AR 459 R Sbjct: 465 ER 466 >gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 778 Score = 320 bits (820), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 163/370 (44%), Positives = 239/370 (64%), Gaps = 8/370 (2%) Query: 3 FSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQR 62 F+ L LS+ ++R + E GY SP+PIQA +P +L+ D+L AQTGTGKTA F LP+L R Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68 Query: 63 LSTMPRQKINGHLPIRALILAPTRELAAQVEESVRQYGKYLP-LTSACIFGGVGINPQIT 121 + I P +AL+LAPTRELA QV E+ ++Y Y+P I+GG Q++ Sbjct: 69 ID------IKQTTP-QALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLS 121 Query: 122 LLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPPK 181 L+RGV ++V TPGR++DH+++G+++L I+ +VLDEAD ML MGFI D+ +L P Sbjct: 122 ALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPES 181 Query: 182 RQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHLI 241 RQ LFSAT IK++A + L +P LI VA + T + I Q+ V +K L ++ Sbjct: 182 RQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRIL 241 Query: 242 KTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLTALI 301 + + +++F RTK G +L +L G +A AI+G+ Q R + + + KDGK+ L+ Sbjct: 242 EAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILV 301 Query: 302 ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLLHDI 361 ATD+AARG+D++++ HV+NYD+P+ PE Y HRIGRTGRAG +GEA+ + ER+LL I Sbjct: 302 ATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAI 361 Query: 362 ERFIKREIPV 371 ER ++ I V Sbjct: 362 ERATRQPISV 371 >gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille] Length = 478 Score = 260 bits (664), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/366 (39%), Positives = 220/366 (60%), Gaps = 13/366 (3%) Query: 2 SFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQ 61 SFS+L LS ++ + GY TPIQAQ++P +L DL+A A+TG+GKTA F + LLQ Sbjct: 20 SFSSLALSPAMLSNLDSLGYREMTPIQAQSLPVILELRDLIAQAKTGSGKTAAFGIGLLQ 79 Query: 62 RLSTMPRQKINGHLPIRALILAPTRELAAQVEESVRQYGKY---LPLTSACIFGGVGINP 118 +L+ ++AL++ PTRELA QV +R+ + + + + C GG + P Sbjct: 80 KLNPT-------WFAVQALVICPTRELADQVSNELRRLARATENIKVLTLC--GGAPMRP 130 Query: 119 QITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAAL 178 QI L+ G I+V TPGR+ DH+ + T+NL +Q LVLDEADRM+DMGF +I +++A Sbjct: 131 QIASLEHGAHIVVGTPGRIRDHISRETINLSKVQTLVLDEADRMVDMGFYEEIAGIVSAC 190 Query: 179 PPKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLA 238 P +RQ LLFSAT+ D+I++ + L +P I+V ++ + I Q+ + VD D ++ +A Sbjct: 191 PTRRQTLLFSATYPDDIRRASAEFLRDPVEIKVEAQHDDSQ-IEQRFYAVDYDDRNAAVA 249 Query: 239 HLIKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLT 298 L+K ++ L F TK +L +L G +A+A++G Q R + L F + + Sbjct: 250 TLLKHYRPVSTLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCS 309 Query: 299 ALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLL 358 L+ATD+AARG+DI L V+N D+ E ++HRIGRTGR G A+SL +E+ + Sbjct: 310 VLVATDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWV 369 Query: 359 HDIERF 364 IE + Sbjct: 370 KLIEEY 375 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 897,726 Number of extensions: 32090 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 6 Length of query: 516 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 429 Effective length of database: 899,382 Effective search space: 385834878 Effective search space used: 385834878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)