BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1574.p (297 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 69 4e-13 gi|152982816|ref|YP_001352236.1| LysR family transcriptional reg... 67 2e-12 gi|152983030|ref|YP_001352585.1| LysR family transcriptional reg... 59 3e-10 gi|152982688|ref|YP_001352216.1| LysR family transcriptional reg... 59 5e-10 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 55 4e-09 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 68.6 bits (166), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 9/186 (4%) Query: 8 LDLRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRAGFKLTAK 67 ++LR +R FLA S + A L++ Q T+S Q+ +E LG +L +R KLT Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 68 GEKFADSARRMMDALTEF--GMEARN-LDKRLVGKLSIGLMGHTPAQHNARLAQVIRAFR 124 GE F A+R AL E G++A N L+ G+++ G++ H L ++ F Sbjct: 61 GELFQVYAKR---ALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFH---LPPILADFN 114 Query: 125 QRDEAVRIELLVRTPGELEEMLLNGNIQIAIGYFWRHVSALQYAPLLQERQVAYCAPPHP 184 + ++I +L GE+EE LL+G++ + Y + PL HP Sbjct: 115 KVYPGIKITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHP 174 Query: 185 LFEQPG 190 L G Sbjct: 175 LVGSAG 180 >gi|152982816|ref|YP_001352236.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 111/264 (42%), Gaps = 28/264 (10%) Query: 13 IRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRAGFKLTAKGEKFA 72 +RVF+AV+D S A L+ QS +S + LE +L L +R + LT G+ Sbjct: 12 LRVFVAVIDCGSFSRAARELHRTQSVVSYTIANLEAQLNVELFDRSKRKPTLTEAGKALL 71 Query: 73 DSARRMMDALTEFGMEARNLDKRLVGKLSIGLMGHTPAQHNARLAQVIRAFRQRDEAVRI 132 AR + + A+ L + L ++S+ + P N RL Q ++AF+Q V + Sbjct: 72 ADARTVGMKVDAMRARAKTLAQGLEAEVSLAVDVMFP---NCRLVQALKAFQQEFPTVGL 128 Query: 133 ELLVRTPGELEEMLLNGNIQIAI-GYFWRHVSALQYAPLLQERQVAYCAPPHPLFEQPGE 191 L + G + ++ QI I G Q+ L V +P HPL + G Sbjct: 129 RLRIEALGAVMHLVGERVCQIGITGPMLDFSDTFQHQQLGHITMVPVASPDHPLGKMEGI 188 Query: 192 IDPEQAVQYAWAWRDYPVPPEHLPLQPRNIMAV-------------TGNMEAMSLLILSG 238 I E A RD+ L L R+ + G++ A +L+L+G Sbjct: 189 IPTEVA-------RDH----TQLVLTDRSQLTAGQNFGVIALRDWRLGDLGAKHMLLLNG 237 Query: 239 QHLGYLPEEMGRDYEARGQMRALN 262 G +PEEM R G+++ L Sbjct: 238 LGWGSMPEEMIRADLESGRLKHLQ 261 >gi|152983030|ref|YP_001352585.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/307 (22%), Positives = 129/307 (42%), Gaps = 30/307 (9%) Query: 10 LRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRAGFKLTAKGE 69 L+ ++VF+ VV++ SA + QS +S Q+ LE LG RL R LT +GE Sbjct: 4 LQAMKVFVRVVEAGSFSAVAHESDTTQSAVSKQVAALERELGVRLLTRTTRSLALTEEGE 63 Query: 70 KFADSARRMMDALTEFGMEARNLDKRLVGKLSIGLMGHTPAQHNARLAQVIRAFRQRDEA 129 ++ + RR++ ++E E + +++L G L I + +L ++++F Sbjct: 64 RYFEQLRRLIAEISEAEGELQRGEQQLTGWLRI---AASVGFGRLKLMPLVQSFLAEHRG 120 Query: 130 VRIEL----------------LVRTPGELEEMLLNGNIQIAIGYFWRHVSALQYAPLLQE 173 V+I+L VR + L+ + A H S L+ P Sbjct: 121 VKIDLRLHDGFIDLVEQGIDVAVRLGDLPDSSLIARRVGTASRMLMAHRSYLRSLP---- 176 Query: 174 RQVAYCAPPHPLFEQPGEIDPEQAVQYAWAWRDYPVPPEHLPLQPRNIMAVTGNM----- 228 + P L E + E A++ W ++ P P+ + I+ V GN+ Sbjct: 177 KGTKTPITPDDLSEHNCIVYTELAMRNTWNFKAGPGAPD--AIGTTRIVRVEGNLQTNSS 234 Query: 229 EAMSLLILSGQHLGYLPEEMGRDYEARGQMRALNRERLSYEVGISVVTNRQSVNEPIVAA 288 E + IL G + Y P + A G+++ + + + + I +V+ R+ + V A Sbjct: 235 EVIRASILGGMGITYSPTWLFEKELASGEVQRILPDWETLPIPIQLVSPRERRHSAKVKA 294 Query: 289 FLDDLQQ 295 F + + Q Sbjct: 295 FAEHVGQ 301 >gi|152982688|ref|YP_001352216.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 287 Score = 58.5 bits (140), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 12/182 (6%) Query: 8 LDLRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRAGFKLTAK 67 +D+ L R FL +V S AA RL+V Q+T++ ++ LE +LG L R RAG +LT Sbjct: 1 MDIELARTFLYIVRSGSFIAAATRLHVTQTTVTARVQNLESQLGCSLFVRNRAGARLTDD 60 Query: 68 GEKFADSARRMMDALTEFGMEARNLDKRLVGKLSIGL-MGHTPAQHNARLAQVIRAFRQR 126 GE+F A +++ +A D L L +G + N + Q R+ Sbjct: 61 GERFVGYASQLVQT-----WDAARRDLPLPDGYGDSLALGSEVSLCNPLMLQWTLQLRRE 115 Query: 127 --DEAVRIELLVRTPGELEEMLLNGNIQIAIGYFWRHVSALQYAPLLQER--QVAYCAPP 182 A+R+E V L+ L G + A+ Y + + +Q LL+E+ QV+ P Sbjct: 116 LPSHAIRVE--VGDGAILQSKLERGLLDAALVYRPEYWTGMQVEQLLEEKLVQVSSTKNP 173 Query: 183 HP 184 P Sbjct: 174 EP 175 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 55.5 bits (132), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 2/148 (1%) Query: 7 DLDLRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRAGFKLTA 66 +DLRL+R F+ V + ++ A R+ + Q +S Q+ LE LG L R G +LT Sbjct: 3 SIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTE 62 Query: 67 KGEKFADSARRMMDALTEFGMEARNLDKRLVGKLSIGLMGHTPAQHNARLAQVIRAFRQR 126 G+ AR +++ + R + G+L++G + A H + VIRAFRQ+ Sbjct: 63 SGQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFT-ESAALHPF-IPAVIRAFRQK 120 Query: 127 DEAVRIELLVRTPGELEEMLLNGNIQIA 154 V + + EL E L + + +A Sbjct: 121 SPGVIMAVEESNTNELVEDLRHNRLDVA 148 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 658,924 Number of extensions: 26072 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 9 Length of query: 297 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 214 Effective length of database: 914,170 Effective search space: 195632380 Effective search space used: 195632380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)