BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1573.p (377 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 162 4e-41 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 160 1e-40 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 152 3e-38 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 145 3e-36 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 143 1e-35 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 162 bits (409), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 136/242 (56%), Gaps = 9/242 (3%) Query: 1 MIELDQLSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTS 60 ++E+ L++ + D T VD +SL + GE LGPSGCGKTT L+MI P + Sbjct: 3 LLEIRNLTRRF--GDNT---VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDA 57 Query: 61 GRVLLNGQDTSGIDEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERAT 120 G++LL+G D +G+ + R + V Q LFP+MT+ NI + K Q++ Sbjct: 58 GQILLDGVDLTGVPPEQ--RPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVD 115 Query: 121 ELMAMVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQ 180 E + V L F RYP ELSGGQ+QR+ + RAL +LL+DEP A+D RE +Q Sbjct: 116 EALEDVRL--TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQ 173 Query: 181 NEFFQMQRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAF 240 E +Q+++ T I V+HD EA+ L ++AV G++ Q D P + + P+ FV+ F Sbjct: 174 IELINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADF 233 Query: 241 VG 242 +G Sbjct: 234 IG 235 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 91/234 (38%), Positives = 134/234 (57%), Gaps = 8/234 (3%) Query: 13 QKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLNGQDTSG 72 QK A++ VSL GE+ LGPSGCGKTT L++I L P G+VLL+G+D S Sbjct: 9 QKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASA 68 Query: 73 IDEVELRRHIGYVIQQIGLFPNMTIEENIT----IVPRLLGWDKKRCQERATELMAMVAL 128 E R +G+V Q LF +MT+ ENI + P + + +E+ T+L+ +V L Sbjct: 69 RHVRE--RQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKLLELVQL 126 Query: 129 DPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQR 188 D RYP +LSGGQ+QRI + RALA + VLL+DEPFGA+D R+ ++ ++ Sbjct: 127 D--WLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHD 184 Query: 189 QLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAFVG 242 L+ T I V+HD +EA+++ D++ + G + Q P + P FV F+G Sbjct: 185 DLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFLG 238 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 152 bits (385), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 6/223 (2%) Query: 22 VDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLNGQDTSGIDE--VELR 79 V ++S + GEI LG SGCGKTT L+ I + +GR+ L G++ S V Sbjct: 30 VHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTVPEA 89 Query: 80 RHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERATELMAMVALDPKKFLKRYPR 139 RH+G V Q LFP++++ +NI R L ++ R +L+A+V L ++ K++P Sbjct: 90 RHVGVVFQDYALFPHLSVSDNIGFGLRKLAAAERNG--RINKLLALVGLQAQE--KKFPH 145 Query: 140 ELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLNKTVIMVSH 199 ELSGGQQQR+ + RALA +LL+DEPF +D RE + +E + +++ T ++V+H Sbjct: 146 ELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTH 205 Query: 200 DIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAFVG 242 D EA + D++ V + G +VQ+D L RP + FV+ F+G Sbjct: 206 DQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVADFIG 248 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 145 bits (367), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 132/234 (56%), Gaps = 5/234 (2%) Query: 13 QKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLNGQDTS- 71 Q++ V AVD VS VA+G+ +G SGCGK+TT ++I RL+ P SG ++ +G+ + Sbjct: 38 QRERKFVHAVDGVSFSVAKGKTLGIVGESGCGKSTTARLIARLVTPDSGSMIFDGEGVAE 97 Query: 72 --GIDEVELRRHIGYVIQQ--IGLFPNMTIEENITIVPRLLGWDKKRCQERATELMAMVA 127 GI+ E RR++ V Q L P +TI E + P+ G K + ERA L+A V Sbjct: 98 FGGIEFKEFRRNLQMVFQDSFASLNPRLTISETVAYGPQAHGVSKAQATERAHALLARVG 157 Query: 128 LDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQ 187 L P++F RYP ELSGGQ+QR+ + RALA + ++++DE A+D + + N +++ Sbjct: 158 LQPEQFASRYPHELSGGQRQRVNIARALAFEPRLVILDEAVAALDKSVQAQVLNLLQELK 217 Query: 188 RQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAFV 241 + + T + +SHD+ + D+V V G++V+ + + + + A + Sbjct: 218 AEHDLTYLFISHDLHVVHYISDEVMVMYMGQVVEMGPVEDIYGNSRHPYTRALL 271 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 127/233 (54%), Gaps = 8/233 (3%) Query: 2 IELDQLSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSG 61 I++ +SK ++ G V+A+ V+L + +GE +G SGCGK+T L+++ +SG Sbjct: 14 IDIKGVSKVFS-IGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSG 72 Query: 62 RVLLNGQDTSGIDEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERATE 121 + G G G V Q GLFP +T++ENI R K + +E + Sbjct: 73 SANMYGMPIDGPSP-----ERGMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAY 127 Query: 122 LMAMVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQN 181 MV L KF YP +LSGG +QR+ + R LA D VLLMDEPFGA+D + RE +Q Sbjct: 128 YTDMVGL--TKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQ 185 Query: 182 EFFQMQRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKD 234 + ++ + TV+ V+H ++EA+ L D+V V AG ++ LARP+D Sbjct: 186 DLLEIWERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDLARPRD 238 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 819,070 Number of extensions: 32238 Number of successful extensions: 296 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 62 Length of query: 377 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 292 Effective length of database: 906,776 Effective search space: 264778592 Effective search space used: 264778592 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)