BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1572.p
         (216 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica...    55   3e-09

>gi|152981435|ref|YP_001354775.1| ABC-type
           nitrate/sulfonate/bicarbonate transport system, permease
           component [Janthinobacterium sp. Marseille]
          Length = 276

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 14/183 (7%)

Query: 32  AIVIGVPLGILIVRVRWLAGPLMGLATIVLTLPSIALFGLMIPVFSHFGAGIGPLPAITA 91
           A ++G+PLG+LI R++ +   L     ++  +P  A   L +  F     GIGP  AI  
Sbjct: 94  AALVGIPLGLLIGRIKVIRDLLDPTLQLLRPVPVTAWLPLSMIFF-----GIGPNAAIFL 148

Query: 92  VFLYSLLPIMRNTYLALENIEAGIKEAGIGIGMTFWQRLRMVDLPLAVPVILGGVRTAVV 151
           VFL +  PI+ NT   ++ ++  + EA + +G       R V LP A+P IL G+R    
Sbjct: 149 VFLGAFYPIVFNTTFGVKAVDNRLFEAALMLGCNGSSLFRQVVLPAAMPSILNGLR---- 204

Query: 152 MNIGVMAIAAVIGA-----GGLGVLILHAISQSNMQKLVVGAVMISVLAIIADTLLQRLQ 206
           +  G   I  V+G       GLG +I+     S    ++ G V+I ++    D +L  + 
Sbjct: 205 LGHGFAWILIVVGEMTGVPEGLGAVIMDGRMLSRTDLVIAGMVVIGIVGYSTDRILVAIN 264

Query: 207 KIL 209
             L
Sbjct: 265 NYL 267


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.145    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 360,002
Number of extensions: 10742
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 3
Length of query: 216
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 137
Effective length of database: 928,958
Effective search space: 127267246
Effective search space used: 127267246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)