BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1569.p
         (233 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980605|ref|YP_001353257.1| hypothetical protein mma_1567 [...   318   2e-88

>gi|152980605|ref|YP_001353257.1| hypothetical protein mma_1567
           [Janthinobacterium sp. Marseille]
          Length = 231

 Score =  318 bits (815), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/224 (68%), Positives = 189/224 (84%)

Query: 10  RRILATSLLLACCGAFAFSLSDLSNQDATAGLKAALEKGASTAVANLGRPNGFLANDKVK 69
           +  LA SL L    AFA SL+D+SN+DAT+G+KAALEKGA+ AV+ LG  NGFL N+KVK
Sbjct: 8   KTTLAVSLSLVVSAAFAVSLADISNKDATSGVKAALEKGATVAVSKLGVENGFLNNEKVK 67

Query: 70  IQLPGALEQAMPILRMTGMGGQVDGLVADMNHAAEAAVPLAKPLLVNAVKSMSVADAKNI 129
           I LP  +E+AMPIL+MTG G +V+ L   MNHAAE+AV LAKPLL++AVKSMSV DAKNI
Sbjct: 68  IGLPSVVEKAMPILKMTGQGKKVEELQVSMNHAAESAVALAKPLLLDAVKSMSVTDAKNI 127

Query: 130 LSGGDTSVTDFFRQKTSGELAVKFLPIVKQITDKNGLSSRYNAVMGQVAKSGLVSAEQST 189
           L+GGDTSVTDFFRQKT+  L  +FLP+VK+ITDKNGL+ +YNA+M +V  SGLVS +++T
Sbjct: 128 LTGGDTSVTDFFRQKTATPLGAQFLPVVKKITDKNGLAPQYNAIMSKVGSSGLVSKDETT 187

Query: 190 VEGYVTQRALDGLFLMIGEEEKAIRKDPVGSGSAIIGKVFGALR 233
           VEGYVT+RALDGL+ MIGEEEKAIR+DPVG+GSAI+GKVFGAL+
Sbjct: 188 VEGYVTKRALDGLYTMIGEEEKAIRQDPVGAGSAILGKVFGALK 231


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.131    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 511,578
Number of extensions: 20491
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 153
Effective length of database: 925,261
Effective search space: 141564933
Effective search space used: 141564933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)