BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1564.p
         (335 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980515|ref|YP_001355306.1| thiamine biosynthesis lipoprote...   327   9e-91

>gi|152980515|ref|YP_001355306.1| thiamine biosynthesis lipoprotein
           [Janthinobacterium sp. Marseille]
          Length = 345

 Score =  327 bits (837), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 168/342 (49%), Positives = 223/342 (65%), Gaps = 11/342 (3%)

Query: 4   RVLIPVELQAPPLPPSGVLAQRFAGHTMGTTWSVQALAPREVAAHTIASAIDAQLQRVIE 63
           R L+P+   AP  P  G +     G TMGT+WSV+ +A        + +AI  QL  V+ 
Sbjct: 3   RTLVPLIETAPESPALGGVVHTLHGQTMGTSWSVKLVAEVTRRLPPLRAAIQQQLDTVVA 62

Query: 64  EMSTWQPDSHISRFNRAPAGSWHALPEAFFTVLDAALTMAVDSDGAFDPTVGPLVDLWGF 123
           +MSTW+  S++S +N+A AGSWH LP+ FFTVL  AL +A  S+GA+DP+ G LV+ WGF
Sbjct: 63  QMSTWEATSNLSLYNQAAAGSWHTLPDEFFTVLQYALKVARASNGAYDPSAGALVNAWGF 122

Query: 124 GPGSDQRRLPH-LPDPRSLQAARLRCGWQRIVLDRTGRRVQQAGGVHLDFSGIAKGYAVD 182
           GP           P P  L+ AR +CGWQRI LD + +RV QAGG+++D S IAKG+ VD
Sbjct: 123 GPCKRYNETDFSTPTPDVLEQARKQCGWQRIELDSSTKRVLQAGGMYIDLSAIAKGFGVD 182

Query: 183 LIAQALRACGCVSWLVEVGGELSGCGVKADGQPYWVALERPPQDA----------GPGMV 232
            +A+ L   G  S+LVEVGGEL G GVK DGQP+WVALE P  DA          G   +
Sbjct: 183 QVARELLRLGIDSFLVEVGGELRGAGVKPDGQPWWVALEHPLPDALASAASNTAVGIETI 242

Query: 233 VALHDLAIATSGDYRRYVDHAGQRYAHTIDPRTGTPVRNVLASVTVLHRQCMVADALATV 292
            AL+D + ATSGDYRRY ++  +RY+HTIDPR+G P+R+ LASVTVLH+ CM ADA +T 
Sbjct: 243 AALYDWSAATSGDYRRYFENDTKRYSHTIDPRSGEPIRHGLASVTVLHKDCMAADAWSTA 302

Query: 293 LTVLGEEDGMSFAQQRGIAALFIRRQGQGYQETMTPAFAAML 334
           L V+G E G+++A Q  +AALFI R   G++E ++ A  A+L
Sbjct: 303 LGVMGAEQGLAYANQHDLAALFINRNKDGFEEHLSSALVALL 344


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 876,480
Number of extensions: 38361
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 251
Effective length of database: 910,473
Effective search space: 228528723
Effective search space used: 228528723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)