BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1562.p
         (181 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981392|ref|YP_001355304.1| hypothetical protein mma_3614 [...   229   1e-61

>gi|152981392|ref|YP_001355304.1| hypothetical protein mma_3614
           [Janthinobacterium sp. Marseille]
          Length = 170

 Score =  229 bits (583), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 103/159 (64%), Positives = 130/159 (81%)

Query: 23  ASAAPAGAAEMNLKIEIPTLNVAEYHRPYLAAWIERADQSVAANLAVWYDMKKKDKEGEK 82
           A   PA AA++N+K+EIP L VAEYH+PY+A WIE ADQ+   NLAVWYD+K K+ EG K
Sbjct: 12  ALTTPAFAADLNVKVEIPRLTVAEYHKPYVAFWIEGADQAFVRNLAVWYDLKMKNNEGTK 71

Query: 83  WLKDMRQWWRRSGREQQMPIDGVSGATRAPGEQKLNFGSTKGAIANLAPGDYVLMVEAAR 142
           WLKDMRQWWR+SGR+ QMP+DG+SGATRAPGEQ+L+F   K  +  L  G+Y L+VEAAR
Sbjct: 72  WLKDMRQWWRKSGRDLQMPVDGLSGATRAPGEQQLSFNGAKSGLDKLPAGEYSLVVEAAR 131

Query: 143 EVGGRELVKLPFQWPPKSPQSAKAQGNSELGAVALELKP 181
           EVGGREL+++PFQWPPK+ Q+A+ +G  ELGAV++ELKP
Sbjct: 132 EVGGRELIRVPFQWPPKTTQTAQVKGEHELGAVSIELKP 170


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.128    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 332,608
Number of extensions: 11113
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 103
Effective length of database: 932,655
Effective search space: 96063465
Effective search space used: 96063465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)