BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1561.p
         (222 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981414|ref|YP_001355303.1| hypothetical protein mma_3613 [...   272   1e-74

>gi|152981414|ref|YP_001355303.1| hypothetical protein mma_3613
           [Janthinobacterium sp. Marseille]
          Length = 212

 Score =  272 bits (696), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 157/210 (74%), Gaps = 2/210 (0%)

Query: 13  PDQKRRAFWLKHLHQWHWISSAICLIAMLAFAATGLTLNHAAQIEAKPQVMHRNATLPLA 72
           P+  +RA+WLK LHQWHWISSA+CL+ ML F+ TG+TLNH++QIEAKPQV  +   LP A
Sbjct: 5   PNNPQRAYWLKTLHQWHWISSALCLLGMLLFSVTGITLNHSSQIEAKPQVSTQELQLPAA 64

Query: 73  LLAPLRQQAEAADAKGGSKAALPQGVRDWISRELSVTVGQHSAEWSTDEVYVALPRPGGD 132
           L   L +   +   K G   AL   ++ W+   LSV V   + EWS +EVY+ALPRPGGD
Sbjct: 65  LQTQLAKANTSESGKEG--GALSPELQGWMKDRLSVDVSGRNIEWSPEEVYIALPRPGGD 122

Query: 133 AWLRVALQDGQVEYEKTDRGWISYFNDLHKGRNTGVAWSWFIDVFAVACLVFCLTGLFLL 192
           AW+R+    G VEYE T+RGWISY NDLHKGRNTG+AWSWFID+FA ACL+F +TGLF+L
Sbjct: 123 AWVRIDRSSGTVEYESTNRGWISYLNDLHKGRNTGMAWSWFIDIFAAACLIFSITGLFIL 182

Query: 193 QMHAGKRPATWPMVGLGLVAPLLLALLLIH 222
           +MHA  RP+TWP+VGLG++ P LLA+L IH
Sbjct: 183 KMHATNRPSTWPIVGLGVLIPFLLAILFIH 212


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.135    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 501,803
Number of extensions: 19154
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 142
Effective length of database: 925,261
Effective search space: 131387062
Effective search space used: 131387062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)