BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1559.p (480 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980958|ref|YP_001351821.1| GntR family transcriptional reg... 623 e-180 gi|152980987|ref|YP_001354760.1| GntR family transcriptional reg... 444 e-126 gi|152981206|ref|YP_001352388.1| GntR family transcriptional reg... 143 2e-35 gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 129 6e-31 gi|152981038|ref|YP_001353695.1| GntR family transcriptional reg... 111 1e-25 >gi|152980958|ref|YP_001351821.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 490 Score = 623 bits (1606), Expect = e-180, Method: Compositional matrix adjust. Identities = 300/481 (62%), Positives = 367/481 (76%), Gaps = 21/481 (4%) Query: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 LY++ A + I +GV RPGER+ S+R SQ H++S+TTVV A+ LLES+G+IES PQS Sbjct: 3 LYEKLAKDIEELIENGVFRPGERLPSIRQTSQHHRLSITTVVHAFLLLESKGVIESHPQS 62 Query: 66 GYFVRQQAETIARPTASPPVQADHPAWQQ---------STEVDVSRLVLATLKTIQQDGT 116 GYFVR PP A+ Q+ S++VDVS LVL+TL++I D Sbjct: 63 GYFVR-----------VPPQSANGKVPQELRTSQPLAISSQVDVSHLVLSTLRSITNDA- 110 Query: 117 VPLGSPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKV 176 VPLGSPYP+P+LFPS ++ +YA I R ++ V D LPPGHP+L+RQIARRYLENG + Sbjct: 111 VPLGSPYPDPSLFPSEKINRYAYGITRRQTKWGVTDALPPGHPDLIRQIARRYLENGSAI 170 Query: 177 DPAEIVVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPRRG 236 DP EIVVTVGATEAINLCLQAV + GD +AVE+PTFYAMLHAIER+GMRA+E+ T PR G Sbjct: 171 DPNEIVVTVGATEAINLCLQAVGKAGDIVAVESPTFYAMLHAIERMGMRAIEVATHPREG 230 Query: 237 IDVAALEERLQTQAVAACMVMPNFQNPLGFQMPDSEKERLVRLAAQHQMPIIENAVYSEL 296 ID+AALE L +AACMVMPNFQNPLGFQMPD +K LV L + Q+P+IEN VY+EL Sbjct: 231 IDLAALEAILDQHQIAACMVMPNFQNPLGFQMPDEKKRALVELITRRQVPVIENDVYNEL 290 Query: 297 YYGNAHPSSLKNYDRDGLVLHCSSFSKSLTSAHRIGWAMPGRYRAQVEKLKFLNTLATPT 356 Y+G+ HP+SLK+YD +GLVLHC+SFSKSLTSA+RIGWAMPGRYR QVEKLKFLNTL TPT Sbjct: 291 YFGDVHPTSLKSYDTEGLVLHCASFSKSLTSAYRIGWAMPGRYRDQVEKLKFLNTLTTPT 350 Query: 357 APQRAIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPEGGYVLWVEL 416 PQ AIAEYL GYE HLR +R+ +AQQ ++MR V RFFP GTQ SEP+GGYVLWVEL Sbjct: 351 IPQLAIAEYLEHDGYEHHLRHIRKVYAQQANIMRAAVKRFFPEGTQTSEPQGGYVLWVEL 410 Query: 417 PPQVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYTWSKETEQALKLVGKLVE 476 PPQVD+M+LY +L GIT+ PG +F+ATN Y++FIRLNYSY WS E A++ +GKL Sbjct: 411 PPQVDSMKLYELALQQGITIGPGYMFSATNGYNNFIRLNYSYPWSAGIEDAIRTIGKLAA 470 Query: 477 E 477 + Sbjct: 471 D 471 >gi|152980987|ref|YP_001354760.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 473 Score = 444 bits (1143), Expect = e-126, Method: Compositional matrix adjust. Identities = 228/475 (48%), Positives = 315/475 (66%), Gaps = 5/475 (1%) Query: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 LY+ A +LA SI+DGVLR G+R+ SVR AS VS +TV +AY LLE+RG+I ++ +S Sbjct: 3 LYETLAAELAQSIQDGVLRIGDRLPSVRQASTSRAVSPSTVFQAYYLLEARGLIRARERS 62 Query: 66 GYFVRQQAETIARPTASPPVQADHPAWQQSTEVDVSRLVLATLKTIQQDGTVPLGSPYPN 125 GY+V A+ + P QA P + S+ VD+S V L++ + VP GS +P+ Sbjct: 63 GYYVAGAAQKLP----PEPEQASQPN-EASSPVDISERVFEVLESAKMRELVPFGSAFPS 117 Query: 126 PALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKVDPAEIVVTV 185 P LFP RLA+ + S DDL PG+P+L RQIA RYL +GL + EIV+T Sbjct: 118 PLLFPMARLARAMASSVQQLDPWSAVDDLTPGNPQLRRQIALRYLADGLHIHTDEIVITN 177 Query: 186 GATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPRRGIDVAALEER 245 GA +A+NLCL AV RPGD + VE+PTFYA L A+ER G+ A+E+PT PR GID+AAL Sbjct: 178 GALDALNLCLAAVTRPGDAVLVESPTFYAALQALERNGLHAIEVPTHPREGIDLAALARA 237 Query: 246 LQTQAVAACMVMPNFQNPLGFQMPDSEKERLVRLAAQHQMPIIENAVYSELYYGNAHPSS 305 ++ AC +M FQNPLG MPD +K LV L AQH++P+IE+ VY ELY+G+ P Sbjct: 238 IERHQPKACWLMTTFQNPLGSLMPDEKKRDLVTLLAQHEIPLIEDDVYGELYFGDKRPMP 297 Query: 306 LKNYDRDGLVLHCSSFSKSLTSAHRIGWAMPGRYRAQVEKLKFLNTLATPTAPQRAIAEY 365 K +D GLV+HCSSFSK L +R+GWA PGR+ V + K TLA Q A+A Y Sbjct: 298 AKAFDSKGLVMHCSSFSKCLAPGYRVGWAAPGRFTRAVARRKLTTTLAASAPAQAALATY 357 Query: 366 LTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPEGGYVLWVELPPQVDAMEL 425 L +GGY++HLR++R + Q+ + R FPAGTQ + P+GGY LW+ELP +V+A+EL Sbjct: 358 LEKGGYDKHLRQLRHTLSVQQTQFMEAIARSFPAGTQATRPKGGYFLWLELPAKVNALEL 417 Query: 426 YRRSLALGITVAPGRIFAATNRYSHFIRLNYSYTWSKETEQALKLVGKLVEELAG 480 +R++LA GI++APG IF+A + +++ IRLNY + W +E AL +G+LV+++AG Sbjct: 418 HRQALAQGISLAPGPIFSAHHGFTNCIRLNYGHVWDARSEAALASLGQLVQKMAG 472 >gi|152981206|ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 488 Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 123/465 (26%), Positives = 211/465 (45%), Gaps = 29/465 (6%) Query: 2 AVTPLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIES 61 A + L +Q + + I D +LR G R+ S+R S QH+VS TVV AY+ L + G++ES Sbjct: 26 AGSSLIEQIVQLITSRIDDKILRTGARMPSIRQFSDQHQVSRFTVVEAYDRLVAGGLLES 85 Query: 62 QPQSGYFVRQQAETIARPTASPPVQADHPAWQQSTEVDVSRLVLATLKTIQQDGTVPLGS 121 + SG++VR +A P +P Q A QQ VDV LV + + Sbjct: 86 RRGSGFYVRDRA-----PMLTPRAQGLQSAAQQP--VDVVWLVRNMFRQLPP-------Q 131 Query: 122 PYPNPALFPSHRL-----AQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKV 176 P L P+ L A ++R + +P G L +Q+ + E + Sbjct: 132 KMPGVGLLPNEWLDGDLVANALRAVSRQNPNLLLQYGIPQGFLPLRQQLQLKMAELEISA 191 Query: 177 DPAEIVVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPRRG 236 P + V T G T+ ++L + +PGDTI V+ P ++ M + LG + + IP P G Sbjct: 192 TPDQFVTTAGVTQGLDLVARHYIQPGDTIFVDDPGWFLMFGSFAALGAKVVGIPRLP-DG 250 Query: 237 IDVAALEERLQTQAVAACMVMPNFQNPLGFQMPDSEKERLVRLAAQHQMPIIENAVYSEL 296 D+A L + ++ NP + ++ +++++A Q+ I+E+ +Y ++ Sbjct: 251 PDIAQLTALAELHRPKLFIINSILHNPTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDM 310 Query: 297 YYGNAHPSSLKNYDRDGL--VLHCSSFSKSLTSAHRIGW-AMPGRYRAQVEKLKFLNTLA 353 + G A ++ + D L V++ FSK+L + R+G+ A Q+ K L L Sbjct: 311 HPGAAVQAATRIAALDQLNRVIYLGGFSKTLAANLRVGFIATSPEIARQLADRKMLTALT 370 Query: 354 TPTAPQRAIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVS-EPEGGYVL 412 T +R + L++G Y +H R+R RD + R G ++ G Sbjct: 371 TTEITERVVYRILSEGHYRKHTDRLRTKLNAVRDKTIRQMERI---GIKIHFHTPAGMFA 427 Query: 413 WVELPPQVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYS 457 W ++ DA L +++ G +APG +F+ S +R N + Sbjct: 428 WTDV--GCDATILAEKAMEQGYLLAPGSLFSPNQLPSTNMRFNVA 470 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 100/400 (25%), Positives = 177/400 (44%), Gaps = 16/400 (4%) Query: 85 VQADHPA---WQ--QSTEVDVSRLVLATLKTIQQDGTVPLGSPYPNPALFP-SHRLAQYA 138 ++ +HP WQ + E S ++ LK + + P+P FP H A + Sbjct: 1 MKIEHPTPINWQFAKRAEQLQSSVIREILKITMRPDIISFAGGLPSPETFPVEHMKAAFD 60 Query: 139 GRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKVDPAEIVVTVGATEAINLCLQAV 198 ++R + + G+ L IA G + P ++++ G+ +A++L + + Sbjct: 61 NVLSRQGKIALQYGP-SDGYAPLREWIADSLSIEGATITPDQVLMVSGSQQALDLLGKVL 119 Query: 199 ARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPRRGIDVAALEERLQTQAVAACMV-- 256 + VETP++ L A + + +PTD D L E + A A ++ Sbjct: 120 IEENSKVLVETPSYLGALQAFSVYQPQFVSVPTD-----DYGLLPEAVDGIADGARLLYA 174 Query: 257 MPNFQNPLGFQMPDSEKERLVRLAAQHQMPIIENAVYSELYYGNAHPSSLKNYDRDGLVL 316 +PNF NP G M + LV A+ +P+IE+ Y L Y + + G V+ Sbjct: 175 LPNFHNPTGRTMSVERRIALVETCARRGLPLIEDDPYGALSYRAEPLPKMLTMNPSG-VI 233 Query: 317 HCSSFSKSLTSAHRIGWAM-PGRYRAQVEKLKFLNTLATPTAPQRAIAEYLTQGGYERHL 375 + SFSK LT R+G+ + P ++E+ K L T Q + E + G H+ Sbjct: 234 YMGSFSKVLTPGIRLGYVVGPTPLIRKLEQAKQAADLHTSQLTQMVVYEAIKDGFLAEHI 293 Query: 376 RRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPEGGYVLWVELPPQVDAMELYRRSLALGIT 435 +R +A Q +M + F P G + ++PEGG +WV LP +D M+L ++A + Sbjct: 294 PSIRTLYANQCQVMLDALAEFAPEGVKWNKPEGGMFIWVTLPKHIDCMQLLEEAIAQKVA 353 Query: 436 VAPGRIFAATNRYSHFIRLNYSYTWSKETEQALKLVGKLV 475 PG F A + +RL++ ++ + + + KL+ Sbjct: 354 FVPGAPFYANEPEKNTLRLSFVTVPPEKIREGVSKLAKLI 393 >gi|152981038|ref|YP_001353695.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 502 Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 112/489 (22%), Positives = 207/489 (42%), Gaps = 27/489 (5%) Query: 5 PLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQ 64 PL+ + + I DG L G + + R +Q VS TV AY L + G IE + Sbjct: 23 PLHARVQRAIRQLILDGALDVGRPLPASRALAQSLGVSRDTVESAYGQLHAEGFIERRVG 82 Query: 65 SGYFVRQQAETIARPTASPPVQADHPAWQQSTEVDVSRLVLATLKTIQQDGTV------- 117 SG +V ++ + + ++ T +S+ K + Q G V Sbjct: 83 SGSYVSERMQRLPGRGRPRRT-----VVERGTTTRLSQ----RGKAMFQSGGVRDFFTPR 133 Query: 118 PLGSPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRY-LENGLKV 176 P P FP + ++ + ++ P G +L R IA LE G + Sbjct: 134 PFAPGVPETRSFPLQTWERLQRQVLKEYGTQALLHSPPQGMEQLRRAIADYVNLERGARA 193 Query: 177 DPAEIVVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPRRG 236 P ++V + +A+ LC + G+ I +E P ++ A + G+ + +P D G Sbjct: 194 SPERVLVLTSSQQALTLCATVLLDAGERIFIEDPVYHGARKAFDAAGLECVPVPLDA-DG 252 Query: 237 IDVAALEERLQT--QAVAACMVMPNFQNPLGFQMPDSEKERLVRLAAQHQMPIIENAVYS 294 + V + E QT Q A + P+ Q P G + + ++ A Q Q IIE+ S Sbjct: 253 LRVERMLELAQTTDQVPRAVFLTPSHQFPTGATLALDRRLAVIEWARQQQGWIIEDDYDS 312 Query: 295 ELYYGNAHPSSLKNYDRDGLVLHCSSFSKSLTSAHRIGW-AMPGRYRAQVEKLKFLNTLA 353 E +Y + ++ D+ ++ +F+KSL RIG+ +P + A + + L Sbjct: 313 EFHYDGKPTACVQGLDQYERTIYIGTFTKSLFPGLRIGYMVLPSQLVAPMTVARTLLDGH 372 Query: 354 TPTAPQRAIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPEGGY--- 410 + PQ +A ++ G + H+R +R +A++RD++ V + P GG Sbjct: 373 SAPIPQLTLARFIEGGHFGAHIRTMRAVYAERRDVLVRLVRLHLSDFVEARVPTGGMQMS 432 Query: 411 VLWVELPPQVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYTWSKETEQALKL 470 +++ P+ A+E R++ GI V A+ R+ + + ++ E E A++ Sbjct: 433 CVFIRDIPEHAAVEAARKA---GIDVLGLTGLHASKRHKTGLLMGFAAHAPHELEIAIRK 489 Query: 471 VGKLVEELA 479 + +++ L Sbjct: 490 LAQVLRTLC 498 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,136,779 Number of extensions: 46506 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 10 Length of query: 480 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 393 Effective length of database: 899,382 Effective search space: 353457126 Effective search space used: 353457126 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)