BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1557.p (775 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982510|ref|YP_001351822.1| formate dehydrogenase oxidoredu... 1188 0.0 gi|152981034|ref|YP_001352093.1| formate dehydrogenase alpha sub... 141 2e-34 gi|152981248|ref|YP_001355342.1| NAD-dependent formate dehydroge... 137 2e-33 gi|152982393|ref|YP_001353660.1| formate dehydrogenase large sub... 122 1e-28 gi|152982608|ref|YP_001352175.1| nitrate reductase catalytic sub... 119 1e-27 >gi|152982510|ref|YP_001351822.1| formate dehydrogenase oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 788 Score = 1188 bits (3073), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/766 (73%), Positives = 641/766 (83%), Gaps = 5/766 (0%) Query: 3 SKPRIEQYNQPAGGWGALKYVALNLVKEHVADGKGLRTLLSQNQPDGFDCPGCAWPDREH 62 S+ IE Y+ PAGGWGA+KYVA+NL+KE VA G RTL QNQP+GFDCPGCAWPDR+H Sbjct: 21 SQGTIETYDHPAGGWGAVKYVAINLIKEKVAGGN-YRTLFKQNQPEGFDCPGCAWPDRQH 79 Query: 63 TSTFEFCENGVKAVAAEATKKRVTPEFFEKHTVTELMQQSDYELEEHGRLTHPMVYDAAT 122 STFEFCENGVKAVAAEAT KRVT FFEK+TV L +QSDYELE+HGRLT PM YDA T Sbjct: 80 ASTFEFCENGVKAVAAEATSKRVTSAFFEKNTVAALFEQSDYELEQHGRLTEPMRYDAKT 139 Query: 123 DKYRKIEWSAAFELMAKHLNALPDPDMADFYVSGRASNEAAFLFQLFVRQYGTNNFPDCS 182 DKY + WS AF+L+A HL+ L +P A FY SGRA NEAAF++QLFVR +GTNNFPDCS Sbjct: 140 DKYVPVTWSVAFKLIASHLHKLDNPHQAAFYTSGRAGNEAAFVYQLFVRMFGTNNFPDCS 199 Query: 183 NMCHEPTSVGLPGTVGIGKGTVLLEDFDHCDTLLLFGQNPATNHPRMMGELRHASKRGAT 242 NMCHE TS GLP TVG+GKGTV L+DF+H DTLL+FGQNPATNHPRM+GELR SKRGA Sbjct: 200 NMCHEATSRGLPSTVGVGKGTVTLDDFEHADTLLIFGQNPATNHPRMLGELRECSKRGAV 259 Query: 243 IVAINPLKERGLERFADPQSKVEMLTMGSTRISSMFIHPKLGGDLALIKGVIKRTIELDD 302 IV+INPL+ERGLERFADPQS VEMLTM ST+I+S FI PKLGGD ALIKGV KRT+ELDD Sbjct: 260 IVSINPLRERGLERFADPQSVVEMLTMSSTKIASTFIQPKLGGDFALIKGVAKRTLELDD 319 Query: 303 VAQAAGTERVIDVAFIEQHTAGFEEFAAQARAESWNDIVEESGVSREDIEKLAQVYVKGK 362 A A G+ERV+D AFI +H GFE FAA R + W ++V+ESGVSR+DIEKL+++YV GK Sbjct: 320 EAVALGSERVLDTAFIAEHCLGFEAFAANLRMQDWQELVDESGVSRDDIEKLSRIYVNGK 379 Query: 363 AVIATWGMGLTQHKYAVATIQLLSNMMMLRGNIGRQGAGLCPVRGHSNVQGDRTVGIDEK 422 VIATWGMG+TQHK +V T+ +LSN+MM+RGNIGR+GAGLCPVRGHSNVQG+RTVGI+EK Sbjct: 380 RVIATWGMGITQHKNSVQTVHMLSNLMMMRGNIGREGAGLCPVRGHSNVQGNRTVGIEEK 439 Query: 423 PTPAFLDRLEQVFGFKAPRHHGNDTVGSVMAMLEGRTKVFIGLGGNFAMATPDTPRTFEA 482 P+ FLDRL +VF F+ PR HG D V ++ MLEG KVFIGLGGNFAMATPDTPRTF+A Sbjct: 440 PSQEFLDRLGKVFNFEPPRGHGYDVVETIHEMLEGHVKVFIGLGGNFAMATPDTPRTFDA 499 Query: 483 LRSCNLTVHITTKLNRSHLVHGKDALILPTMGRTEIDVQKSGPQGVTVEDSMSMVHVSYG 542 LRSC+LTVHITTKLNRSHLVHG DALILPT+GRTEID Q QGVTVEDSMSMVH+SYG Sbjct: 500 LRSCDLTVHITTKLNRSHLVHGGDALILPTLGRTEIDKQNGVAQGVTVEDSMSMVHISYG 559 Query: 543 INKPASEHLMSETAIVAHLAEATMKSRNNGPKIDWLWYAEDYSRIRDAIEKVYDAFKGYN 602 +N PAS++LMSETAIVA++A AT+ S K+DWL YA DYS +RDAIE V D F+ YN Sbjct: 560 MNTPASKNLMSETAIVANIAHATLGS----GKVDWLGYAADYSLVRDAIESVLDGFENYN 615 Query: 603 ERIANPGGFHLGVASRDRVWKTGSGKANFIVHEIPKDTPIHRARAIHGEKLLTLMTTRSH 662 ERIA PGGFHL VASR+R W T +GKANFIVH + +DTPI RAR HGE+L+TLMTTRSH Sbjct: 616 ERIAIPGGFHLRVASREREWLTDTGKANFIVHNVEQDTPIRRARQQHGEQLMTLMTTRSH 675 Query: 663 DQYNTTIYGMDDRYRGVFGQRRVVFIHPQDLQMLGLKDGEWVDITSVWDDGVERRAEGFL 722 DQYNTTIY MDDRYRGVFGQRRVVFI+PQDL MLG K G+WVD+++VWDDG+ER A FL Sbjct: 676 DQYNTTIYAMDDRYRGVFGQRRVVFINPQDLLMLGFKAGDWVDMSTVWDDGIERHANRFL 735 Query: 723 LVEYEIPRGCIGSYYPETNPLVPLESFADKARTPTSKSIPVLLSRS 768 LVEY+IPRGCIG+YYPETNPLVPL S D TPTSKSIPVLL S Sbjct: 736 LVEYDIPRGCIGAYYPETNPLVPLNSVGDVCNTPTSKSIPVLLRPS 781 >gi|152981034|ref|YP_001352093.1| formate dehydrogenase alpha subunit [Janthinobacterium sp. Marseille] Length = 946 Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 163/677 (24%), Positives = 266/677 (39%), Gaps = 114/677 (16%) Query: 103 DYELEEHGRLTHPMVYDAATDK--------------YRKIEWSAAFELMAKHLNALPD-- 146 DY H RLT P++ A K +R+ W A E+ + + D Sbjct: 275 DYANHPH-RLTKPLIRRADAPKSGDFIMDPDRVMEVFREATWEEALEVAGGNFAKIRDTH 333 Query: 147 --PDMADFYVSGRASNEAAFLFQLFVRQ-YGTNNFPDCSNMCHEPTSVGLPGTVGIGKGT 203 +A F S + SNE A+LFQ VR +G+NN C+ +CH + V L +G G + Sbjct: 334 GKKSLAGFG-SAKGSNEEAYLFQKLVRTGFGSNNVDHCTRLCHASSVVALLEGIGSGAVS 392 Query: 204 VLLEDFDHCDTLLLFGQNPATNHPRMMGELRHASKRGATIVAINPLKERGLERFADPQSK 263 + D + +++ G NP NHP +++A G ++ +P + Sbjct: 393 NPVMDVTKAEVVIIIGANPTVNHPVAATWIKNAVSNGTKLIVCDP-------------RR 439 Query: 264 VEMLTMGSTRISSMFIHPKLGGDLALIKGVIKRTIELDDVAQAAGTERVIDVAFIEQHTA 323 EM +RI+ F+ K D+A++ ++ + TE ++D FIE T Sbjct: 440 TEM-----SRIAHRFMQFKADTDVAMLNAMMNVIV----------TEGLVDKEFIESRTI 484 Query: 324 GFEEFAAQARAESWNDIVEESGVSREDIEKLAQVYVKGKAVIATWGMGLTQHKYAVATIQ 383 G+EE + + G+ E + +A++Y K + WGMG++QH + + Sbjct: 485 GYEELRKNVEGYTPELMAPICGIDAETLRYVARLYATSKGSMILWGMGVSQHIHGTDNAR 544 Query: 384 LLSNMMMLRGNIGRQGAGLCPVRGHSNVQGDRTVGI------------DEKPTPAFLDRL 431 L + ++ G IGR G GL P+RG +NVQG G+ D K F Sbjct: 545 CLIALALMTGQIGRPGTGLHPLRGQNNVQGASDAGLIPMVYPDYQSVSDPKIRANFAKAW 604 Query: 432 EQVFGFKAPRHHGNDTVGSVMAMLEGRTKVFIGLGGNFAMATPDTPRTFEALRSCN-LTV 490 P G V + A+ +G+ + G N AM+ PD EAL + + L V Sbjct: 605 NMSVDLLDP-EPGLTVVEIMHAITDGKIRGLYVQGENPAMSDPDANHAREALAALDHLVV 663 Query: 491 HITTKLNRSHLVHGKDALILPTMGRTEIDVQKSGPQGVTVEDSMSMVHVSYGINKPASEH 550 ++L +ILP E K+G T ++ V + P E Sbjct: 664 QDIFLTETAYLAD----VILPASAFPE----KTG----TFTNTDRTVQMGRQALNPPGE- 710 Query: 551 LMSETAIVAHLAEATMKSRNNGPKIDWLW--YAEDYSRIRDAIEKVY----------DAF 598 + I+ +A N +DW + +E + +R + + D+ Sbjct: 711 AKQDLWIIQQMA--------NRLGLDWQYKHVSEVFDEMRHTMPSIAGITWDRLEREDSV 762 Query: 599 KGYNERIANPGGFHLGVASRDRVWKTGSGKANFIVHEIPKDTPIHRARAIHGEKLLTLMT 658 E+ +PG + V S R SG+A F+ +I I A E + L+T Sbjct: 763 TYPCEKEGDPGEPVVFVDSFPR----ESGRARFVPADI-----IPAAERPDPEYPMVLIT 813 Query: 659 TRSHDQYNTTIYGMDDRYRGVFGQRRVVFIHPQDLQMLGLKDGEWVDITSVWDDGVERRA 718 R + ++T + IHP DL +G K G+ + + S RR Sbjct: 814 GRQLEHWHTGSMTRRATVLDSIEPDPIALIHPLDLANMGGKPGDIITLQS-------RRG 866 Query: 719 EGFLLVEYE--IPRGCI 733 E L + PRG + Sbjct: 867 EVSLYARADDGSPRGAV 883 >gi|152981248|ref|YP_001355342.1| NAD-dependent formate dehydrogenase alpha subunit [Janthinobacterium sp. Marseille] Length = 957 Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 112/410 (27%), Positives = 176/410 (42%), Gaps = 50/410 (12%) Query: 111 RLTHPMVYDAATDKYRKIEWSAAFELMA---KHLNALPDPDMADFYVSGRASNEAAFLFQ 167 R+ PM+ TD ++++ W A A K + A D VS R +NE +L Q Sbjct: 294 RMLKPMIRSKITDPWKEVSWDEAINYAASELKRIQAKYGKDSIGGLVSSRCTNEEGYLVQ 353 Query: 168 LFVRQ-YGTNNFPDCSNMCHEPTSVGLPGTVGIGKGTVLLEDFDHCDTLLLFGQNPATNH 226 VR +G NN C+ +CH PT GL T+G GT E D +L+ G NPA+ H Sbjct: 354 KLVRAAFGNNNVDTCARVCHSPTGYGLKVTMGESAGTQTFESVMKSDVILVIGANPASGH 413 Query: 227 PRMMGELRHASKRGATIVAINPLKERGLERFADPQSKVEMLTMGSTRISSMFIHPKL--G 284 P +++ ++GA ++ ++P R E P + + H KL G Sbjct: 414 PVFASQMKRRIRQGAKLIVVDP---RTTEMVKSPHIQADY-------------HLKLKPG 457 Query: 285 GDLALIKGVIKRTIELDDVAQAAGTERVIDVAFIEQHTA--GFEEFAA-QARAESWNDIV 341 ++A++ + I TE + FI FEE+A + E+ + + Sbjct: 458 SNVAIVNALAHVII----------TENLHKPDFIAARCEVDSFEEWAEFVSLPENSPEAM 507 Query: 342 EE-SGVSREDIEKLAQVYVKGKAVIATWGMGLTQHKYAVATIQLLSNMMMLRGNIGRQGA 400 EE SGV DI A+++ G +G+G+T+H T+ ++N+ M GNIGR G Sbjct: 508 EEVSGVPAADIRGAARLFATGGNAAIYYGLGVTEHAQGSTTVIGIANLAMATGNIGRDGV 567 Query: 401 GLCPVRGHSNVQGDRTVGIDEKPTPAFLD--------RLEQVFGFKAPRHHGNDTVGSVM 452 G+ P+RG +NVQG +G P + E V+G G Sbjct: 568 GVNPLRGQNNVQGSCDMGSFPHELPGYRHVSDSVARAEFEAVWGCTLESEPGLRIPNMFD 627 Query: 453 AMLEGRTKVFIGL---GGNFAMATPDTPRTFEALRSCNLTVHITTKLNRS 499 A ++G F+GL G + + P+T AL + + LN + Sbjct: 628 AAMDG---TFMGLYCEGEDIVQSDPNTQHVTAALEAMECIIVQDIFLNET 674 >gi|152982393|ref|YP_001353660.1| formate dehydrogenase large subunit precursor [Janthinobacterium sp. Marseille] Length = 987 Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/329 (27%), Positives = 136/329 (41%), Gaps = 37/329 (11%) Query: 106 LEEHG----RLTHPMVYDAATDKYRKIEWSAAF-ELMAKHLN--ALPDPDMADFYVSGRA 158 L EHG RL +PM KY++I W A E+ AK L+ PD F S + Sbjct: 122 LREHGHGEYRLKYPM--KLVNGKYQRISWDQALNEISAKMLDIRKASGPDSVYFVGSSKH 179 Query: 159 SNEAAFLFQLFVRQYGTNNFPDCSNMCHEPTSVGLPGTVGIGKGTVLLEDFDHCDTLLLF 218 +NE A L + FV +GTNN + +CH T G+ T G G T D + L Sbjct: 180 NNEQAALMRKFVSFFGTNNTDHQARICHSTTVAGVANTWGYGAMTNSYNDMQNSKAALYI 239 Query: 219 GQNPATNHPRMMGELRHASKRGATIVAINPLKERGLERFADPQSKVEMLTMGSTRISSMF 278 G N A HP M + HA + G ++ ++P R+ +K + + Sbjct: 240 GSNAAEAHPVSMLHMLHAKETGTKMIVVDP-------RYTRTAAKAD-----------QY 281 Query: 279 IHPKLGGDLALIKGVIKRTIELDDVAQAAGTERVIDVAFIEQHTAGFEEFAAQARAESWN 338 I + G D+ + GV+ + G E D +I G E+ + + Sbjct: 282 IRIRSGSDIPFLWGVLYHIFK-------NGWE---DKKYINDRVYGMEKVREEVMKWTPE 331 Query: 339 DIVEESGVSREDIEKLAQVYVKGKAVIATWGMGLTQHKYAVATIQLLSNMMMLRGNIGRQ 398 + E GV +I K A+ + W MG TQH A ++ + + GN+G+ Sbjct: 332 KVEEACGVPEAEIYKAAETMAMNRPSTIVWCMGQTQHSIGNAMVRASCILQLALGNVGKS 391 Query: 399 GAGLCPVRGHSNVQGDRTVGIDEKPTPAF 427 G G RGH NVQG VG + P + Sbjct: 392 GGGTNIFRGHDNVQGATDVGPNPDSLPGY 420 >gi|152982608|ref|YP_001352175.1| nitrate reductase catalytic subunit [Janthinobacterium sp. Marseille] Length = 939 Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/398 (25%), Positives = 160/398 (40%), Gaps = 39/398 (9%) Query: 106 LEEHGRLTHPMVYDAATDKYRKIEWSAAFELMAKHLNA-LPD--PDMADFYVSGRASNEA 162 L++ R +P + A TD+ + W+ + +A A + D PD FY+SG+ E Sbjct: 77 LQQQARALYPELRLARTDQRERASWATTLDFLANKFAATIRDHGPDSVGFYLSGQLLTED 136 Query: 163 AFLFQLFVRQY-GTNNFPDCSNMCHEPTSVGLPGTVGIGKGTVLLEDFDHCDTLLLFGQN 221 ++F + GTNN S +C G T+G ED D D + L G N Sbjct: 137 YYVFNKLAKGLIGTNNVDTNSRLCMSSAVAGYKQTLGADAPPPCYEDIDQADVIFLVGSN 196 Query: 222 PATNHPRMMGELRHASKRGATIVAINPLKERGLERFADPQSKVEMLTMGSTRISSMFIHP 281 A HP + + A K + I ADP+ + R + +F+ Sbjct: 197 TAYAHPIVYRRIEDARKANPALKVI----------VADPRR------TDTAREADLFLPI 240 Query: 282 KLGGDLALIKGVIKRTIELDDVAQAAGTERVIDVAFIEQHTAGFEEFAAQARAESWNDIV 341 G D+AL G++ + E ++DV +I HT GF E R + + Sbjct: 241 LPGTDVALFNGMLHICL----------WEDLVDVDYIAAHTEGFAELKQTVREYTPKMVA 290 Query: 342 EESGVSREDIEKLAQVYVKGKAVIATWGMGLTQHKYAVATIQLLSNMMMLRGNIGRQGAG 401 E G++ D+ + A+ + + KA ++ + GL Q A L N+ + IG+ GAG Sbjct: 291 EICGINEADLMQAARWFGQAKAALSMYCQGLNQSSSGTAKNAALINLHLATHQIGKPGAG 350 Query: 402 LCPVRGHSNVQGDRTV--------GIDEKPTPAFLDRLEQVFGFKA-PRHHGNDTVGSVM 452 + G N G R V G + P + ++G A P G V Sbjct: 351 PFSLTGQPNAMGGREVGGLATMLSGHRDLGNPQHRAEIAALWGVDAVPEKPGKSAVEMFE 410 Query: 453 AMLEGRTKVFIGLGGNFAMATPDTPRTFEALRSCNLTV 490 A+ G K+ + N A + P+ EALR+ L V Sbjct: 411 AVRTGEIKLIWIVCTNPAQSMPEQAMIREALRNAELVV 448 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,898,834 Number of extensions: 82809 Number of successful extensions: 224 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 5 Length of query: 775 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 684 Effective length of database: 884,594 Effective search space: 605062296 Effective search space used: 605062296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)