BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1556.p
         (172 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regu...   114   4e-27
gi|152981736|ref|YP_001352356.1| AsnC family transcriptional reg...    90   6e-20
gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinob...    65   2e-12

>gi|152980927|ref|YP_001351836.1| Lpr family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 155

 Score =  114 bits (284), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 86/152 (56%)

Query: 21  LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGYYARVNPESLG 80
            D+ D  +L  LQ  GR S  EL E+V LS   C  RV+R+E++GVI GY A+V+  ++G
Sbjct: 4   FDRYDRILLETLQSKGRASNVELSERVNLSPPQCYRRVQRLEQEGVIRGYSAQVDAAAIG 63

Query: 81  ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 140
             +  FV + +  +      +  + + + PE+ EC+ +SGDFDYL+K     +      L
Sbjct: 64  LGVTAFVNLNIAREQFKQVRELEKAIRQFPEILECYTISGDFDYLLKVVAVDLKSLSSFL 123

Query: 141 GDILLQLPGAAQSKSYVVMEEIKETLALPLDD 172
            D L+Q+PG A  +S V +EEIK    LPL D
Sbjct: 124 TDRLMQVPGVAGVRSMVCLEEIKPASPLPLPD 155


>gi|152981736|ref|YP_001352356.1| AsnC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 169

 Score = 90.1 bits (222), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 74/123 (60%)

Query: 18  IRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGYYARVNPE 77
           + TLDK+D ++L +LQKD +   + L ++V +S   C+ R+R M   G+IS   A ++P 
Sbjct: 4   LHTLDKVDRKLLNLLQKDNQTPTRTLADKVHISQPTCLRRIRDMRDAGIISADVAMIDPF 63

Query: 78  SLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYR 137
           +LG  +L F+E++L ++S    ++F   + +  EV +C+ VSGD+DY +   +  M  Y 
Sbjct: 64  ALGYGMLAFLEVSLGNQSDEHMQEFEVRMGKEAEVMQCYFVSGDYDYFLVVHVVDMDAYY 123

Query: 138 KLL 140
           + +
Sbjct: 124 QFV 126


>gi|152981798|ref|YP_001355132.1| auxin efflux carrier
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score = 65.5 bits (158), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%)

Query: 21  LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVISGYYARVNPESLG 80
           LD+LD RIL  LQ D   +  +L   V  S   C+ RV+R+   GVI    A V P+ +G
Sbjct: 8   LDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAIVAPQMVG 67

Query: 81  ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKL 139
           A L   VEITL+ ++     +F   V +   V +C+ VS   D+++  ++  M  Y  L
Sbjct: 68  AGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADMPAYHVL 126


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 361,475
Number of extensions: 13960
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 172
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 95
Effective length of database: 936,352
Effective search space: 88953440
Effective search space used: 88953440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)