BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1555.p (433 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Jan... 336 1e-93 gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, sma... 334 5e-93 gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Jan... 280 8e-77 >gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 504 Score = 336 bits (862), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 172/417 (41%), Positives = 246/417 (58%), Gaps = 11/417 (2%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 M+V++LGSG+IG SAW+L +AGH+VTV++RQPG A ETSF N QIS +A+PWA G Sbjct: 63 MKVIVLGSGIIGTASAWFLNKAGHEVTVVERQPGAAQETSFANGCQISVSHATPWANKGA 122 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNADSYAINKERMVRLAEYSRDCLR 120 PL +K + +E APL R Q +W LR C N ++V +AEYSR L+ Sbjct: 123 PLTILKALGKEDAPLLYRFRAEWLQWKWGMNFLRECTPQRTVHNIHQIVAIAEYSRQTLQ 182 Query: 121 ELRADVGIPYEGREQGTLQLFRSQEQLDGAAKDIAVLKEAGVPFELLTPEQLGGAEPALE 180 +R +V I Y+ +G L + Q+ D + +V++E G P E LT EQ EPAL Sbjct: 183 AVRQEVDIDYDCLTRGILHFYTQQKDFDESLASASVMRELGCPREPLTVEQAVQLEPALA 242 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYDVAIDALTMAGGKIAGVVCG 240 +R ++ G DE+GD FTT LA+ A++ GV F ++ + L G A V G Sbjct: 243 HIRKQIVGADFTETDESGDIYKFTTGLARKAQERGVHFEFNTTVTRLITEGTGAAARVTG 302 Query: 241 KELV---------QADSYVVALGSYSPQMLRDVPGLPAIPVYPLKGYSITVPITDATAAP 291 E++ AD++V+A+GS+S ML+ P + +YP KGYS T PI + AP Sbjct: 303 VEVINPEGRHMSLHADAFVMAMGSFSVPMLK--PLGINLMIYPGKGYSATYPIVNPDLAP 360 Query: 292 VSTILDETYKIAVTRFDDRIRVGGMAEIVGYDTALRAKRRATLEMVVNDLFPGAGDTTQA 351 +++D+ YK+ ++R D++RV G E GY L A R + +LFP A D + Sbjct: 361 AVSLIDDGYKLVLSRLGDKLRVAGTCEFNGYSRELNATRCEAITRRTRELFPDACDYSNP 420 Query: 352 SFWTGLRPMTPDGTPVVGATPVSNLFINTGHGTLGWTMSCGSGQLLADLISGRRPAI 408 ++W GLRP+TP P +G T SNL++NTGHG+LGWTM CGSG+ +AD+ISG +P + Sbjct: 421 AYWAGLRPLTPSNVPYIGKTKFSNLYLNTGHGSLGWTMGCGSGRAIADIISGVQPEV 477 >gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, small subunit [Janthinobacterium sp. Marseille] Length = 438 Score = 334 bits (857), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 171/417 (41%), Positives = 250/417 (59%), Gaps = 11/417 (2%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 M+V++LGSG+IG +SAW+L + GH+VTV++RQPG A ETSF N QIS +A PWA P Sbjct: 1 MKVIVLGSGIIGTSSAWFLNKLGHEVTVIERQPGAAQETSFANGCQISVSHAEPWANPAA 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNADSYAINKERMVRLAEYSRDCLR 120 P+K +KW+ +E APL R Q +W LR C N ++V + EYSR L+ Sbjct: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNDNIRQIVAICEYSRQTLQ 120 Query: 121 ELRADVGIPYEGREQGTLQLFRSQEQLDGAAKDIAVLKEAGVPFELLTPEQLGGAEPALE 180 +RA+ GI Y+ G L + Q++ D + ++++ G P + ++ +++ EPAL Sbjct: 121 AVRAETGINYDQLTSGILHFYTDQKEFDDSLPAAKLMRDLGCPRDSISADEVVRIEPALA 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYDVAIDALTMAG----GKIAG 236 +R K+ GG DE+GD FT+ LA A + GV F+Y+ ++ L G KI G Sbjct: 181 SIRNKIVGGDFTATDESGDVYKFTSGLAAKAAEAGVDFQYNTSVTRLLTEGSGANAKITG 240 Query: 237 V-VCG----KELVQADSYVVALGSYSPQMLRDVPGLPAIPVYPLKGYSITVPITDATAAP 291 V V G +++ AD+YV+A+GS+S +++R P + +YP KGYS T + D AAP Sbjct: 241 VEVIGPDGRHKVLHADAYVMAMGSFSAELVR--PLGIDLMIYPGKGYSATYKVIDPAAAP 298 Query: 292 VSTILDETYKIAVTRFDDRIRVGGMAEIVGYDTALRAKRRATLEMVVNDLFPGAGDTTQA 351 ++ D+ YK+ V+R DR+RV G E+ GY L R + +LFP A D Sbjct: 299 TVSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDACDYDNP 358 Query: 352 SFWTGLRPMTPDGTPVVGATPVSNLFINTGHGTLGWTMSCGSGQLLADLISGRRPAI 408 +WTGLRP+TP P +G T SNL++NTGHGTLGWTM CGSG+ LA+++SG +P + Sbjct: 359 VYWTGLRPLTPSNVPYIGKTKYSNLYLNTGHGTLGWTMGCGSGRALAEIVSGLQPDL 415 >gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 414 Score = 280 bits (717), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 155/418 (37%), Positives = 240/418 (57%), Gaps = 5/418 (1%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 M+V ++G+GVIGV++A++LA AGH+V V++R A E S+G++G ++ +PWAAPG+ Sbjct: 1 MQVAVIGAGVIGVSTAYFLAEAGHEVVVIERHNNVAEEASYGDSGILAASSIAPWAAPGV 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNADSYAINKERMVRLAEYSRDCLR 120 P + ++ + AP+ + + L WM + ++ + + Y IN+ERM R+ YSRD ++ Sbjct: 61 PRSFLSYLLKSEAPVLLNQPWRPSMLGWMRRWMKEADIERYRINRERMQRIGFYSRDIMQ 120 Query: 121 ELRADVGIPYEGREQGTLQLFRSQEQLDGAAKDIAVLKEAGVPFELLTPEQLGGAEPALE 180 LR + YE + G LQLFR++ L A L E +P +LL Q + AL Sbjct: 121 MLRERHQLDYE-QTPGYLQLFRTERDLQLAKTSFDYLSEHNIPHKLLDAGQAHAVDSALN 179 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYDVAIDALTMAGGKIAGVVCG 240 L G L LP DE G+C LFT ++ A+ +GV+F + + ++ + + + Sbjct: 180 P-NTPLAGALYLPEDEAGNCPLFTRQIRAQAQAMGVEFLFGSKVKSIEESKRGV-HLQID 237 Query: 241 KELVQADSYVVALGSYSPQMLRDVPGLPAIPVYPLKGYSITVPITDATAAPVSTILDETY 300 A+ VVA G+ S ++L P +P+ +K Y T I + +APV+ ++DE Y Sbjct: 238 DHSFSAECVVVAGGADSAKLL--TPLGLHLPLRAVKSYCATATIRNFESAPVAAVVDEAY 295 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALRAKRRATLEMVVNDLFPGAGDTTQASFWTGLRPM 360 KIA+TR RIRV G AE+ + LR TL V D FP A + A+FW+G Sbjct: 296 KIAITRMGKRIRVAGTAELGSNNAELRQTALNTLLKVGYDWFPDACNYNTAAFWSGSSLA 355 Query: 361 TPDGTPVVGATPVSNLFINTGHGTLGWTMSCGSGQLLADLISGRRPAIAHEDLSVARY 418 PDG P++GA V N+++N GHG+ GW M+ GSG++LAD+ISGR P I + L+ +RY Sbjct: 356 LPDGAPLLGACRVRNVYLNIGHGSTGWAMAAGSGKVLADVISGRTPDIDLDGLTPSRY 413 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,140,608 Number of extensions: 52443 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 3 Length of query: 433 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 347 Effective length of database: 903,079 Effective search space: 313368413 Effective search space used: 313368413 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)