BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1554.p (545 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 284 9e-78 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 282 5e-77 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 281 5e-77 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 280 2e-76 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 280 2e-76 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 284 bits (727), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 216/522 (41%), Positives = 304/522 (58%), Gaps = 12/522 (2%) Query: 1 MSFLQNLRVSARLALLSALFLVAMLVMVSWSIFSLHSISSQERQMYQERIAPMQKLNTAA 60 M+ L N+R+ ARLA+ + M ++ ++ +SI QM + T Sbjct: 1 MNIL-NVRIGARLAMGFGAIFILMATLIVLALLRFNSIGEINHQMVDSDWVKAEAAATID 59 Query: 61 LAMAIHFRRGYSYIYPNANDPKSRV-GTRALNQKAEAQIQDAFDYLQGAEKSPQLEPLLA 119 + + RR + + + + A N+KA I +A L + + + L+ Sbjct: 60 VTTRANARRNMELLMETESAKVAALFADIAKNKKA---IDEAVVVLDKLIYTDKGKALMQ 116 Query: 120 ALNQAWPAYRESFQRLMDKADQDDVPGALAELQKTTDPAHVKLRDVFLQIVKQYDQAVQD 179 +A Y SF ++ + A L T PA ++ + Q+ + V++ Sbjct: 117 EFKEARGKYVASFGKVGKLVADNHRDEARQILLSETLPALDVVQGIVAQLTAVQKKMVEE 176 Query: 180 HISRSAESVDRTAWYLVALLAAMVVVGVAFSVVIQRSITRQLGGEPLY-AVAIAQAIADG 238 + +A +D ++ L A V G+A + I SIT+ PL+ AV IAQ +A G Sbjct: 177 RGATAAGHIDAAIQMMMVLGALAAVGGIALAYWITHSITK-----PLHEAVKIAQTVAAG 231 Query: 239 DLASRVKLRQGDQ-GSVLTAMESMRLRLSHLVQEVYKSCHAIDTGASEIADGNLNLSRRT 297 DL S ++ + D+ G +L A++ M L +V EV S AI +++IA GN++LS RT Sbjct: 232 DLTSVIEAKYKDETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRT 291 Query: 298 EEQASNLEQTAASMEQLTGSVKQNAQTVGEAVKRAGDASQEASQGGDAVAGVVDLMGDIA 357 EEQAS+LE+TA+SME+LTG+V+QNA +A + A AS AS+GGD V+ VVD MG I Sbjct: 292 EEQASSLEETASSMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSIN 351 Query: 358 SSSARIKEIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAHRSAQAAR 417 S+ +I +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA RSA AA+ Sbjct: 352 DSAKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAK 411 Query: 418 EIKTLIEDSVDKVDSGYAKVQEASQAISGVVDRVRQVATLVTEIGVSTQEQTQGIAQVGT 477 EIKTLI DSV KV++G V +A + VV VR+V ++ EI ++QEQT GI Q+ Sbjct: 412 EIKTLIGDSVQKVNAGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQ 471 Query: 478 AVEQLDNSTQQNAALVEQSAAAAESLSAQASKLLELMQVFKL 519 AV Q+D+ TQQNAALVEQ+AAAA SL QA L +++ VFKL Sbjct: 472 AVIQMDSVTQQNAALVEQAAAAAASLQHQAGSLAQVVGVFKL 513 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 282 bits (721), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 217/528 (41%), Positives = 304/528 (57%), Gaps = 29/528 (5%) Query: 4 LQNLRVSARLALLSALFLVAMLVMVSWSIFSLHSISSQERQMYQERIAPMQKLNTAAL-A 62 + NL++S RL+ AL L M++M I L + + M Q + P ++L L A Sbjct: 3 ITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTML-PKERLAQEWLSA 61 Query: 63 MAIHFRRGY-SYIYPNAND--------PKSRVGTRALNQKAEAQIQDAFDYLQGAEKSPQ 113 + ++ R S +A D K+ V L ++ E+ I K+P+ Sbjct: 62 VDVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMI-----------KTPE 110 Query: 114 LEPLLAALNQAWPAYRESFQRLMDKADQDDVPGALAELQKTTDPAHVKLRDVFLQIVKQY 173 + L L A AYR+ Q + + +P A + + PA + + V Q Sbjct: 111 DKRLFEELVVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNS-IDAVLQN 169 Query: 174 DQAVQDHISRSAESVDRTAW-YLVALLAAMVVVGVAFSVVIQRSITRQLGGEPLYAVAIA 232 ++ + D S +S + L+ LLAA V +GV F+ + SITR L AV +A Sbjct: 170 EKKLIDEAGTSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLN----RAVTVA 225 Query: 233 QAIADGDLASRVKLRQGDQ-GSVLTAMESMRLRLSHLVQEVYKSCHAIDTGASEIADGNL 291 + +A GDL++++++ D+ G ++ A++ M L+ V EV I T + +IA GNL Sbjct: 226 RTVASGDLSAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNL 285 Query: 292 NLSRRTEEQASNLEQTAASMEQLTGSVKQNAQTVGEAVKRAGDASQEASQGGDAVAGVVD 351 +LS RTEEQAS+L +TAASM QLT +V+QNA +A A AS A +GG V+ VVD Sbjct: 286 DLSSRTEEQASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVD 345 Query: 352 LMGDIASSSARIKEIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAHR 411 M I S+ +I +II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LA R Sbjct: 346 TMASINESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQR 405 Query: 412 SAQAAREIKTLIEDSVDKVDSGYAKVQEASQAISGVVDRVRQVATLVTEIGVSTQEQTQG 471 SA AA+EIK LI DSV KV++G V EA ++ +VD V++V ++ EI ++QEQ+ G Sbjct: 406 SAAAAKEIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSG 465 Query: 472 IAQVGTAVEQLDNSTQQNAALVEQSAAAAESLSAQASKLLELMQVFKL 519 I QV A+ Q+D TQQNAALVE++AAAAESL QA L ++ FKL Sbjct: 466 IDQVNQAIGQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKL 513 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 281 bits (720), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 217/534 (40%), Positives = 303/534 (56%), Gaps = 35/534 (6%) Query: 1 MSFLQNLRVSARLALLSALFLVAMLVMVSWSIFSLHSISSQERQMYQERIAPMQKLNTAA 60 M F N+++ ARL L + L + + + I LH++S+ R M + IA + ++ A Sbjct: 1 MIFFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA 60 Query: 61 LAMAIHFRRGYSYIYPNANDPKSRVGTRALNQKAEAQIQDAF---DYLQGAEKSPQLEPL 117 R + DP A AQ F D Q E +LEPL Sbjct: 61 AITKASIARTIGV--AKSADP------------ALAQFSAKFAADDSKQSMEIIQKLEPL 106 Query: 118 LAALNQAWPAY------RESFQRLMDKADQDDVPGALAELQKTTD----PAHVKLRDVFL 167 L +Q Y R+SF + + G AE K D PA ++ F Sbjct: 107 LNT-DQEKELYAKILDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFT 165 Query: 168 QIVKQYDQAVQDHISRSAESVDRTAWYLVALLAAMVV-VGVAFSVVIQRSITRQLGGEPL 226 + V + ++ D + V+ + + LL+AMV+ G+ + + ITR L Sbjct: 166 EFV-ELERKQMDAGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLK---- 220 Query: 227 YAVAIAQAIADGDLASRVKLRQGDQ-GSVLTAMESMRLRLSHLVQEVYKSCHAIDTGASE 285 AV A+ +A GDL + +K D+ G +L A++ M L +V EV I T ++E Sbjct: 221 TAVDAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNE 280 Query: 286 IADGNLNLSRRTEEQASNLEQTAASMEQLTGSVKQNAQTVGEAVKRAGDASQEASQGGDA 345 IA GNL+LS RTE+QAS+LE+TA+SME+LT +VKQNA +A + A AS+ A +GGD Sbjct: 281 IAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDV 340 Query: 346 VAGVVDLMGDIASSSARIKEIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 405 V+ VV M I SS +I +II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EV Sbjct: 341 VSQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEV 400 Query: 406 RTLAHRSAQAAREIKTLIEDSVDKVDSGYAKVQEASQAISGVVDRVRQVATLVTEIGVST 465 R+LA RSA AA+EIK LI DSV KVD+G V EA + +V+ +R+V ++ EI ++ Sbjct: 401 RSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAAS 460 Query: 466 QEQTQGIAQVGTAVEQLDNSTQQNAALVEQSAAAAESLSAQASKLLELMQVFKL 519 QEQ+ GI Q+ A+ Q+D+ TQQNA+LVE++AAAAES+ QA KL +++ FKL Sbjct: 461 QEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 280 bits (716), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 215/545 (39%), Positives = 316/545 (57%), Gaps = 57/545 (10%) Query: 1 MSFLQNLRVSARLALLSALFLVAMLVMVSWSIFSLHSISSQE--RQMYQERIAPMQKLNT 58 MSFL N R+ RLA+ LV L + S +I +H+ + E R M ++ P+ K Sbjct: 1 MSFLSNFRIGTRLAI--GFILVLALSVASTAIALIHARQNAEATRLMMEK---PLAKERI 55 Query: 59 AALAMAIHFRRGYSYIYPNANDPKSRVGTRALNQKAEAQIQDAF-DYL-----QGAEKSP 112 + Y +IY + T + + + + D F D + QG+ Sbjct: 56 TS--------DWYVFIYS------AIARTSMIARSTDDTLSDVFADVIADSTKQGSALLK 101 Query: 113 QLEPLLAA-----LNQAWPAYRESFQRLMDKADQDDVPGALAELQKTTDPAHVKLRDVFL 167 LE ++ + L Q R+++Q+ + G AE ++ A+++ +FL Sbjct: 102 SLEGMITSDAERKLYQQTIELRKAYQKGKEDVMNAKKGGNKAEAER----AYLQ---IFL 154 Query: 168 QIVKQYDQAVQDHISRSAESVD-----------RTAWYLVALLAAMVVVGVAFSVVIQRS 216 K Y + V + +S +++D R+ ++ L ++++G A ++VI RS Sbjct: 155 PAAKAYQEKVLEFLSVQRKAIDQISRDIDDAHQRSLNLMIGLGVLLILLGAACAIVITRS 214 Query: 217 ITRQLGGEPLY-AVAIAQAIADGDLASRVKLRQGDQ-GSVLTAMESMRLRLSHLVQEVYK 274 IT+ PL A+ +A ADGDL + D+ G ++ A+ M L +V +V Sbjct: 215 ITK-----PLRSAIDVASRAADGDLTGDIGKPSKDEIGDLMRALGGMNDGLKKIVNDVKA 269 Query: 275 SCHAIDTGASEIADGNLNLSRRTEEQASNLEQTAASMEQLTGSVKQNAQTVGEAVKRAGD 334 I+T ++EIA GNL+LS RTE+QA++LE+TA+SME+LT +VKQNA+ +A + A Sbjct: 270 GTDFINTASAEIAHGNLDLSSRTEQQAASLEETASSMEELTSTVKQNAENAQQANQLAVS 329 Query: 335 ASQEASQGGDAVAGVVDLMGDIASSSARIKEIIAVIDGIAFQTNILALNAAVEAARAGEQ 394 AS A++GG V ++ MG I SSS +I +II VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 330 ASDVAAKGGAVVKEMISTMGAINSSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 389 Query: 395 GRGFAVVASEVRTLAHRSAQAAREIKTLIEDSVDKVDSGYAKVQEASQAISGVVDRVRQV 454 GRGFAVVA+EVR+LA RSA AA+EIK+LI DSV VD+G V EA + + VV+ +R V Sbjct: 390 GRGFAVVATEVRSLAQRSAAAAKEIKSLIGDSVSNVDAGSKLVSEAGKTMDDVVNSIRHV 449 Query: 455 ATLVTEIGVSTQEQTQGIAQVGTAVEQLDNSTQQNAALVEQSAAAAESLSAQASKLLELM 514 ++ EI ++QEQ+ GI QV TA+ Q+D TQQNAALVE++AAA++SL QA KL +++ Sbjct: 450 TDIMNEIMAASQEQSSGIEQVNTAISQMDQVTQQNAALVEEAAAASQSLRDQADKLAQIV 509 Query: 515 QVFKL 519 VFKL Sbjct: 510 NVFKL 514 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 280 bits (715), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 213/529 (40%), Positives = 309/529 (58%), Gaps = 29/529 (5%) Query: 4 LQNLRVSARLALLSALFLVAMLVMVSWSIFSLHSISSQERQM----YQERIAPMQKLNTA 59 + NL++ RL L A+ L+ M M+ ++ L ++ M ++ER+ L Sbjct: 3 ISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHKERLTHEWYLGNV 62 Query: 60 ALAMAIHFRRGYSYIYPNANDPKSRVGTRALNQKAE-AQIQDAFDYLQGAEKSPQLEPLL 118 A A+ R + I N + + + Q E +++Q+ L +E+ +L ++ Sbjct: 63 ANAI-----RTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVV 117 Query: 119 AALNQAWPAYRESFQRLMDKADQDDVPGALAELQKTTDPAHVKLRDV------FLQIVKQ 172 A+ R+ +L +A+ A ++ DPA + F Q++ Q Sbjct: 118 GEKRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVIFQ 177 Query: 173 YDQAVQDHISRSAESVDRTAWYLVALLAAMVVVGVAFSVVIQRSITRQLGGEPL-YAVAI 231 +A D + S ++ L+ L + +++ + ++ RSITR PL YAV++ Sbjct: 178 RAKADVDALYASGRTI------LITLGSIALILSAFLAWLLSRSITR-----PLDYAVSV 226 Query: 232 AQAIADGDLASRVKLRQGDQ-GSVLTAMESMRLRLSHLVQEVYKSCHAIDTGASEIADGN 290 A+ +A GDL ++++ D+ G +L A+ M L V +V I T +++IA GN Sbjct: 227 ARTVASGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGN 286 Query: 291 LNLSRRTEEQASNLEQTAASMEQLTGSVKQNAQTVGEAVKRAGDASQEASQGGDAVAGVV 350 L+LS RTEEQAS+LE+TA+SME+LT +VKQNA +A + A AS A +GG+ V+ VV Sbjct: 287 LDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVV 346 Query: 351 DLMGDIASSSARIKEIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAH 410 D M I +S+ +I +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LA Sbjct: 347 DTMEQINASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQ 406 Query: 411 RSAQAAREIKTLIEDSVDKVDSGYAKVQEASQAISGVVDRVRQVATLVTEIGVSTQEQTQ 470 RSA AA+EIKTLI DSVDKV+ G V EA + VV V+ V +++EI ++QEQ+ Sbjct: 407 RSAAAAKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSA 466 Query: 471 GIAQVGTAVEQLDNSTQQNAALVEQSAAAAESLSAQASKLLELMQVFKL 519 GI QV A+ Q+D TQQNAALVE++AAAAESL+ QA+KL E + VFKL Sbjct: 467 GIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKL 515 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.126 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 838,941 Number of extensions: 28230 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 21 Length of query: 545 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 457 Effective length of database: 895,685 Effective search space: 409328045 Effective search space used: 409328045 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)