BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1553.p (270 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982248|ref|YP_001354010.1| AraC family transcriptional reg... 170 9e-44 gi|152980647|ref|YP_001352738.1| AraC family transcriptional reg... 141 3e-35 gi|152982202|ref|YP_001353604.1| AraC family transcriptional reg... 121 5e-29 gi|152982321|ref|YP_001353346.1| AraC family transcriptional reg... 110 1e-25 >gi|152982248|ref|YP_001354010.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 263 Score = 170 bits (430), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 133/241 (55%) Query: 19 IARPVVAAGADYPSGSLQPWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAVWIPSGRE 78 I RP D + L +H H R QL++ G + V+T+ G+WVVPPQ AVW+P G Sbjct: 14 IERPAGGMARDLANHHLIDYHQHPRGQLIYAYSGAILVMTELGSWVVPPQRAVWVPPGMM 73 Query: 79 HQSRMLLPVTTCSAFVEPDHAPRDALTCQVLEVRPLLRELLIEATRIDPRYAPHSCEENL 138 H + V + +V PDH P + C V+ V PLLREL+ I Y + L Sbjct: 74 HSMQACGNVEMRTVYVRPDHIPPELTGCCVVSVPPLLRELIAAMVHIPLHYDEAGRDGLL 133 Query: 139 MRLLLQEIGRAREIPVHVPLPQDDKLGALCRDFMREPSIHARPGQWAQRLYMSERSFNRR 198 ++LLL EI + + +H+P+P D +L +C+ + EPS +W++ + S R+ R Sbjct: 134 VQLLLHEIKPLQVVRLHLPMPSDPRLAKICQRILNEPSDETTVDEWSKFIGASARTIVRL 193 Query: 199 FLAQTGMGFQQWRLRACVVNAISRLALGHSVTVIAYDLGYERPAAFSTMFRKMTGYAPSS 258 F QTG+ F QW+ +A ++ AI LA +VT IA LGYE P+AFS MF++ G P+ Sbjct: 194 FPEQTGLTFSQWKQQARLLAAIQMLATNKNVTDIALQLGYESPSAFSAMFKRAIGLTPTE 253 Query: 259 H 259 + Sbjct: 254 Y 254 >gi|152980647|ref|YP_001352738.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 259 Score = 141 bits (356), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 123/244 (50%), Gaps = 2/244 (0%) Query: 17 DGIARPVVAAGADYP-SGSLQPWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAVWIPS 75 D + +P VA D S S P H HR+ QL+ L G + G W+VPPQ VWIP Sbjct: 13 DRLFQPAVALRIDTEGSESESPIHMHRKGQLVVALHGGVTCEVPGGLWMVPPQCGVWIPG 72 Query: 76 GREHQSRMLLPVTTCSAFVEPDHAPRDALTCQVLEVRPLLRELLIEATRIDPRYAPHSCE 135 G H +R C FVEP A C L + PL+RE+++ + Y P Sbjct: 73 GMPHSNRATANARLCFLFVEPGAASLPG-ECATLALTPLIREMILHLADLPQHYPPDGHT 131 Query: 136 ENLMRLLLQEIGRAREIPVHVPLPQDDKLGALCRDFMREPSIHARPGQWAQRLYMSERSF 195 L+ +LL E+ +H+P+ +L + + P + +W +R MSER+ Sbjct: 132 AKLVEVLLSELVMMPTEQLHLPVSDHARLRQIASALTQHPDDRSTVAEWGERFAMSERTL 191 Query: 196 NRRFLAQTGMGFQQWRLRACVVNAISRLALGHSVTVIAYDLGYERPAAFSTMFRKMTGYA 255 R L +TGM F +WR + ++ A+ RLA G SV ++ DLGY+ +AF TMF+K G + Sbjct: 192 ARLVLNETGMTFGRWRRQLHLIIALQRLASGASVQRVSEDLGYDSVSAFITMFKKALGKS 251 Query: 256 PSSH 259 P+ + Sbjct: 252 PARY 255 >gi|152982202|ref|YP_001353604.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 255 Score = 121 bits (303), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 131/246 (53%) Query: 12 PIDRIDGIARPVVAAGADYPSGSLQPWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAV 71 P + G P A DYP G + P H H AQLL+ L G++ V TQDG WVVPP V Sbjct: 6 PYQDLVGSDAPAAALAIDYPHGHVIPPHRHAYAQLLYALEGVLTVETQDGRWVVPPTRGV 65 Query: 72 WIPSGREHQSRMLLPVTTCSAFVEPDHAPRDALTCQVLEVRPLLRELLIEATRIDPRYAP 131 W+ +HQ M V + FV P P VL++ LLREL++ A I P Sbjct: 66 WLQPDVDHQVSMRGDVKMRTVFVNPTFLPNLPQQSCVLDIPLLLRELIVSAISITPELQV 125 Query: 132 HSCEENLMRLLLQEIGRAREIPVHVPLPQDDKLGALCRDFMREPSIHARPGQWAQRLYMS 191 S + +L+ LL+ E+ +P+++PLP D +L +C+ M P + A L +S Sbjct: 126 GSRDWHLLHLLVLELRSVPVLPLYLPLPADSRLREICQQTMAYPDEQNSVAEQAAILGIS 185 Query: 192 ERSFNRRFLAQTGMGFQQWRLRACVVNAISRLALGHSVTVIAYDLGYERPAAFSTMFRKM 251 R+F+R FL +TGM + WR +A ++ A+ RLA G V +A + GY +AF+ MF+K Sbjct: 186 TRTFHRLFLRETGMRYGHWRQQARLLLALERLARGDKVIDVALEHGYSSQSAFAAMFKKH 245 Query: 252 TGYAPS 257 +PS Sbjct: 246 FDISPS 251 >gi|152982321|ref|YP_001353346.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 249 Score = 110 bits (274), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 17/238 (7%) Query: 30 YPSGSLQPWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAVWIPSGREHQSRMLLPVTT 89 YP G+ H HR AQLLF G+MQV T G W+VPP AVW+P G EH ML + Sbjct: 8 YPRGTRLGLHVHREAQLLFASSGVMQVTTPKGHWLVPPARAVWLPPGIEHAVDMLADIEM 67 Query: 90 CSAFVEPDH------APRDALTCQ-VLEVRPLLRELLIEATRID--PRYAPHSCEENLMR 140 + ++P+ APR L + V V PLLRE ++ A + D P+ E L Sbjct: 68 RALLIQPEQLAQHPAAPR--LQSEFVATVGPLLRETILGAFKADSHPQRLALLLELALFE 125 Query: 141 LLLQEIGRAREIPVHVPLPQDDKLGALCRDFMREPSIHARPGQWAQRLYMSERSFNRRFL 200 L+ E R +P+P D + + + +P+ + A S R+ R F Sbjct: 126 LVEDEDAR-----TFMPMPHDARARRVADMILADPANGSELELLAYSAGASARTITRLFP 180 Query: 201 AQTGMGFQQWRLRACVVNAISRLALGH-SVTVIAYDLGYERPAAFSTMFRKMTGYAPS 257 A+T + F++WR RA ++ A+ L G S+ +A LG+ A+F FR++ G PS Sbjct: 181 AETNLTFKEWRQRARIMAAVEALGNGQTSIKQLALQLGFSSVASFGHAFRQIMGMTPS 238 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 653,777 Number of extensions: 26085 Number of successful extensions: 74 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 71 Number of HSP's successfully gapped: 4 Length of query: 270 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 188 Effective length of database: 917,867 Effective search space: 172558996 Effective search space used: 172558996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)