BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1546.p
         (392 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981545|ref|YP_001351826.1| methylated-DNA-[protein]-cystei...   104   1e-23
gi|152981560|ref|YP_001351825.1| methylated-DNA-[protein]-cystei...   103   1e-23
gi|152981780|ref|YP_001352163.1| methylated-DNA-[protein]-cystei...    67   1e-12

>gi|152981545|ref|YP_001351826.1| methylated-DNA-[protein]-cysteine
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 164

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 89/152 (58%), Gaps = 2/152 (1%)

Query: 212 LGALLVAATEQGICAITLGAEAKPLVQQLQDRFPQADLAPADAAFEQTLAQVLAVLHDPQ 271
           +G LL+AAT QGI  I    E     +      P +  + A+   ++T  Q+       +
Sbjct: 11  VGILLLAATGQGIAGIYF--EEHKHFKGKDGWQPASAQSAANKHLQETARQLDEYFSGRR 68

Query: 272 HGAALPLDVRGTAFQQRVWQALRAVPPGVTLTYAELAARIGQPKAVRAVANACAQNEIAV 331
               + LD+ GTAFQ+ VWQ L A+P G +++YA+ A R+G PKA+RAV +A  +N +++
Sbjct: 69  TEFDVTLDMSGTAFQRSVWQELSAIPFGASVSYAQHAQRLGNPKALRAVGSAIGKNPVSI 128

Query: 332 LIPCHRIVRLDGSPSGYRWGVERKAALLAQEA 363
           ++PCHR++   G+ +GY  G+ERK  LLA E 
Sbjct: 129 IVPCHRVIGSSGAVTGYAGGLERKRFLLALEG 160


>gi|152981560|ref|YP_001351825.1| methylated-DNA-[protein]-cysteine
           S-methyltransferase [Janthinobacterium sp. Marseille]
          Length = 499

 Score =  103 bits (258), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 5/174 (2%)

Query: 26  WQAVQGRDPTADGRFWYAVKSTGVYCKPSCGARTPLRKNVSFHDSCAAAEAAGFRPCQRC 85
           ++A+  +D   DG F+  VK+TG+YC+P C  +TP   + ++  + AAAEAAGFRPC RC
Sbjct: 21  YRALAAKDARFDGVFFVGVKTTGIYCRPVCSVKTPRESSCTYFSTAAAAEAAGFRPCLRC 80

Query: 86  KPDQPP--LQQRQAQAIAQACRLIEAAQQAPATDILAQAVGLSRYHFHRLFKQHTGLTPK 143
           +P+  P  LQQ  A A+ Q  R+   A     T+ L+  VGLS     R+  +H G+TP 
Sbjct: 81  RPELAPYALQQNLAYAVWQ--RIAAGALNDGDTERLSAEVGLSSRQLRRVLLEHFGVTPV 138

Query: 144 AYADAHRASRLRTQLGDS-PSVTAAFYEAGFNSSGRFYAHSAAQLGMKPATYRR 196
             A   R    +  L ++   ++   Y AGF S  RF A   A+ GM P + RR
Sbjct: 139 ELAQTQRLLFAKKLLQETHLPMSDVAYAAGFGSIRRFNALFLARYGMAPTSIRR 192


>gi|152981780|ref|YP_001352163.1| methylated-DNA-[protein]-cysteine
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 166

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 214 ALLVAATEQGICAITLGAEAKPLVQQLQDRFPQADLAPADAAFEQTLAQVLAVLHDPQHG 273
           +L  A  E    AI + +E   + + +       + A  DA  E+   QV   L DP   
Sbjct: 8   SLFTAIVEASFGAIGIRSEDGHIRELVYLPASFDEKAAVDAVSERAALQVERYLGDPDFR 67

Query: 274 AALPLDVRGTAFQQRVWQALRAVPPGVTLTYAELAARIGQPKAVRAVANACAQNEIAVLI 333
             LPL   GT FQ +VW+A+  +  G  LTY ++A R+    A RAV  AC  N   ++I
Sbjct: 68  FDLPLAPIGTDFQNKVWKAIAEISRGEVLTYGDIARRV--KSAPRAVGQACGANWYPLVI 125

Query: 334 PCHRIVRLDG--------SPSGYRWGVERKAALLAQE 362
           PCHR+   +G          + +  GV+R   LLA E
Sbjct: 126 PCHRVTAANGLGGFSHYDDETSFHVGVKR--WLLAHE 160


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.131    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 872,435
Number of extensions: 33233
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 307
Effective length of database: 906,776
Effective search space: 278380232
Effective search space used: 278380232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)