BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1545.p
         (172 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regu...   135   2e-33
gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinob...    82   2e-17
gi|152981736|ref|YP_001352356.1| AsnC family transcriptional reg...    79   2e-16

>gi|152980927|ref|YP_001351836.1| Lpr family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 155

 Score =  135 bits (340), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 97/149 (65%)

Query: 7   DRYDLALLTELQRDGHITNSALGLKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVVGL 66
           DRYD  LL  LQ  G  +N  L  +V+LS  Q  RRVQRLE+  VI  Y+A +D A +GL
Sbjct: 5   DRYDRILLETLQSKGRASNVELSERVNLSPPQCYRRVQRLEQEGVIRGYSAQVDAAAIGL 64

Query: 67  GVTAFTTVTLDRQGETRGELFEKAVEAMPEVTECFSVTGEGDYILRIVAPDLAAFSEFMM 126
           GVTAF  + + R+   +    EKA+   PE+ EC++++G+ DY+L++VA DL + S F+ 
Sbjct: 65  GVTAFVNLNIAREQFKQVRELEKAIRQFPEILECYTISGDFDYLLKVVAVDLKSLSSFLT 124

Query: 127 TRLLRLPGVTNVKSNITLKKVKQSHELPL 155
            RL+++PGV  V+S + L+++K +  LPL
Sbjct: 125 DRLMQVPGVAGVRSMVCLEEIKPASPLPL 153


>gi|152981798|ref|YP_001355132.1| auxin efflux carrier
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score = 82.0 bits (201), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 75/145 (51%)

Query: 4   INVDRYDLALLTELQRDGHITNSALGLKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAV 63
           +++D  D  +L  LQ D   TN+ L   VH S     RRV+RL +A VIER  A++ P +
Sbjct: 6   LDLDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAIVAPQM 65

Query: 64  VGLGVTAFTTVTLDRQGETRGELFEKAVEAMPEVTECFSVTGEGDYILRIVAPDLAAFSE 123
           VG G+T+   +TLD+Q + +   FE  V     V +C+ V+   D++L +   D+ A+  
Sbjct: 66  VGAGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADMPAYHV 125

Query: 124 FMMTRLLRLPGVTNVKSNITLKKVK 148
                      V NV+S  ++ + K
Sbjct: 126 LAHRLFATHANVRNVRSFFSINRSK 150


>gi|152981736|ref|YP_001352356.1| AsnC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 169

 Score = 78.6 bits (192), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 74/143 (51%)

Query: 6   VDRYDLALLTELQRDGHITNSALGLKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVVG 65
           +D+ D  LL  LQ+D       L  KVH+S     RR++ + +A +I    A++DP  +G
Sbjct: 7   LDKVDRKLLNLLQKDNQTPTRTLADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFALG 66

Query: 66  LGVTAFTTVTLDRQGETRGELFEKAVEAMPEVTECFSVTGEGDYILRIVAPDLAAFSEFM 125
            G+ AF  V+L  Q +   + FE  +    EV +C+ V+G+ DY L +   D+ A+ +F+
Sbjct: 67  YGMLAFLEVSLGNQSDEHMQEFEVRMGKEAEVMQCYFVSGDYDYFLVVHVVDMDAYYQFV 126

Query: 126 MTRLLRLPGVTNVKSNITLKKVK 148
              +     V + +S   +K+ K
Sbjct: 127 RRAISGSGNVRHFQSRFPMKRAK 149


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 361,630
Number of extensions: 13174
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 3
Length of query: 172
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 95
Effective length of database: 936,352
Effective search space: 88953440
Effective search space used: 88953440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)