BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1541.p
         (279 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...    97   2e-21
gi|152981667|ref|YP_001351969.1| solute-binding periplasmic prot...    61   6e-11

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 125/253 (49%), Gaps = 20/253 (7%)

Query: 17  LLASASLFPVAAHADRLAQIQARGALICATLANNEPLG-FPDPQTSQIVGFDVDMCSAVA 75
           L+A A L    A AD L  IQ +G L  A   +  P G      T Q  G D+D+ + +A
Sbjct: 10  LMAGALLLTNVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQ--GLDIDVATLIA 67

Query: 76  RKLGVRMQHKSVTVEARLPTLMQGQADLLSAALGYTRQRSHQIDFTASHYQNPIKLIVHS 135
           +KLGV+++   VT   R+P L   + DL+ +++G   +R   IDF+A++      +   +
Sbjct: 68  KKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFFNGVFGPA 127

Query: 136 DAGLNLVSDLADKRISANRNSTPEQAAHRVLPK-ATLVTFPD---TPQAFLA-----LAQ 186
           D  +   +DLA K I   R S  +    ++ P+ AT+  + D   T  +FL+     +A 
Sbjct: 128 DQKVAAPADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSNQVQLVAT 187

Query: 187 GKVDALAISMPSGIRFVNESGGRFRFVEGALAWEPTALGVKKGEHKLLDAVNQALAALEK 246
           G V A AI        + ++  +    +  +   P ++G+ KGE KLL+ VN  +A  +K
Sbjct: 188 GNVIAAAI--------IAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKK 239

Query: 247 EGEIDALWSKWFG 259
           +G ++ L  KW G
Sbjct: 240 DGSLNTLTEKWLG 252


>gi|152981667|ref|YP_001351969.1| solute-binding periplasmic protein
           of glutamate/aspartate ABC transporter
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 61.2 bits (147), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 110/239 (46%), Gaps = 14/239 (5%)

Query: 33  LAQIQARGALICATLANNEPLGFPDPQTSQIVGFDVDMCSAVARKL-------GVRMQHK 85
           L +I+   ++      ++ P  F D    Q +G+ VD+C  +   +        +++  +
Sbjct: 32  LKKIKDTNSITIGYRESSIPFSFLD-DKQQPIGYAVDLCMKIVDTVKADLKLPNLKVVMQ 90

Query: 86  SVTVEARLPTLMQGQADLLSAALGYTRQRSHQIDFTASHYQNPIKLIVHSDAGLNLVSDL 145
            VT   R+P L  G  DL   +   ++ R  Q+ F  +++   +   V   + +N + DL
Sbjct: 91  PVTSSNRIPLLRNGTIDLECGSTTNSKVRQEQVSFGPNYFVINVTAAVKKTSNINSLDDL 150

Query: 146 ADKRISANRNS--TPEQAAHRVLPKATL--VTFPDTPQAFLALAQGKVDALAIS--MPSG 199
             K IS    +   P    ++      +  +   D  +AFL +A  +  A  +   + +G
Sbjct: 151 NGKTISTTSGTTSVPLLKGYKKTENIQVKEIYGKDHAEAFLLMADDRAVAFVMDNILLAG 210

Query: 200 IRFVNESGGRFRFVEGALAWEPTALGVKKGEHKLLDAVNQALAALEKEGEIDALWSKWF 258
               ++  G ++ +  +L+ EP ++ ++K + +    V++++ A+ K GEI+ +++KWF
Sbjct: 211 QIANSKRPGDYKILPESLSQEPYSMMLRKDDPQFKALVDKSIGAVMKSGEINKIYAKWF 269


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 619,793
Number of extensions: 25176
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 197
Effective length of database: 917,867
Effective search space: 180819799
Effective search space used: 180819799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)