BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1540.p (234 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 240 5e-65 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 240 5e-65 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 218 4e-58 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 182 1e-47 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 171 4e-44 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 240 bits (613), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 119/233 (51%), Positives = 163/233 (69%), Gaps = 1/233 (0%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML+ +++ YGA ++ +SL V +GEIVTLIGANGAGK+T L + G + G + Sbjct: 16 MLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRM 75 Query: 61 EGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNE-EIEQGIAYVFGL 119 G ++ E++ G++ PEGRRVFP LTV EN++MGA+ ++ ++ + +F Sbjct: 76 NGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDMERMFDK 135 Query: 120 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTI 179 FPRL+ER Q AGT+SGGEQQMLAI RALMS+PRL++ DEP+LGLAP ++ QIF +IR I Sbjct: 136 FPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIREI 195 Query: 180 RASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLG 232 R+ G TV +VEQNA AL + DRGY+LENGH+V S A + AN E+R+AYLG Sbjct: 196 RSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLG 248 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 240 bits (613), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 125/237 (52%), Positives = 167/237 (70%), Gaps = 3/237 (1%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGR-PRAS-SGRV 58 +L+ + YG IEA+ GV L V KGE++TLIGANGAGKTT L + G P G + Sbjct: 5 VLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRVEGHI 64 Query: 59 IFEGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEE-IEQGIAYVF 117 + GQ I L + E++R+ LA+ PEGR VF +++ ENL MGAF +++ I I F Sbjct: 65 EYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADIDKWF 124 Query: 118 GLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIR 177 G+FPRLKERAAQ AGT+SGGEQQMLA+ RALMS P LLLLDEP++GL+P+++ +IFE+IR Sbjct: 125 GVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 178 TIRASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLGHG 234 T+ A G+T+ LVEQNA AL A+R YV+E+G V M +L++ +VR+AYLG G Sbjct: 185 TVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAYLGEG 241 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 218 bits (554), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 106/225 (47%), Positives = 155/225 (68%), Gaps = 1/225 (0%) Query: 9 THYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIFEGQDITRL 68 T Y + LH VS+ V G+I ++GANGAGK+TL+ ++ G G +++ G+++ Sbjct: 11 TGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWGGKNLAGE 70 Query: 69 PTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEEIEQG-IAYVFGLFPRLKERA 127 TH I+ G++ PEGR+VFP +TV ENL +GAF S+ + + +A V+ +FPRLKERA Sbjct: 71 KTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVVRDRLARVYEIFPRLKERA 130 Query: 128 AQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIRASGVTVF 187 AQ AGTMSGGEQ M++IGR LM++P+LL++DEP+LGL+PL + + F++I+ I A G+TV Sbjct: 131 AQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIKQINALGITVL 190 Query: 188 LVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLG 232 LVEQNA + L ++ GYVL G V+ + L +N +VR AY G Sbjct: 191 LVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 182 bits (463), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 95/232 (40%), Positives = 147/232 (63%), Gaps = 5/232 (2%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 +L+ +H YG LHG+ + ++ GEIV+L+G NGAG++T + G A++G + F Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMV-AATGTIRF 62 Query: 61 EGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEEIEQGIAYVFGLF 120 +G++I LPT+ I R+GL E R +FP+L+V +NL +GA S + ++ LF Sbjct: 63 KGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQAKSRWSADD----MYRLF 118 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIR 180 PRL+ER +AG +SGGEQQMLA+ R LM P L+++DEPT GLAP ++A + ++ + Sbjct: 119 PRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQELV 178 Query: 181 ASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLG 232 GV+V L+EQ AL ++ R YV+ +G VV S +L A++ VR+ +LG Sbjct: 179 QRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLG 230 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 171 bits (432), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 96/217 (44%), Positives = 136/217 (62%), Gaps = 1/217 (0%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 MLQ ++++ +YGA L G+SL+VEKG+ ++L+G NG GKTTLL L G ++G V Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 61 EGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEEIEQGIAYVFGLF 120 +G+DIT+L H+ G+A P+GR +F LTV ENL MG S ++ V+ LF Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASVIKGEVYELF 120 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIR 180 P LKE +R G +SGG+QQ LAI RAL+++P+L++LDEPT G+ P +I I +I +R Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 181 ASG-VTVFLVEQNANKALGVADRGYVLENGHVVMSDS 216 G + + L EQ + A +AD VL G VV S S Sbjct: 181 ERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGS 217 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 531,342 Number of extensions: 21359 Number of successful extensions: 284 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 63 Length of query: 234 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 154 Effective length of database: 925,261 Effective search space: 142490194 Effective search space used: 142490194 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)