BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1539.p (258 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 235 2e-63 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 223 7e-60 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 159 1e-40 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 159 1e-40 gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPa... 152 3e-38 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 235 bits (600), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 115/249 (46%), Positives = 163/249 (65%), Gaps = 1/249 (0%) Query: 8 MLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEITL 67 +L ++ +S RFGGL A+ V++ + + +++ +IGPNGAGKTT FN I+G YQ +G L Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 68 DGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPSYR 127 G + H+VA+ G+ RTFQNIRLF MT +EN+++ +H + + L + + R Sbjct: 66 AGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAAR 125 Query: 128 RSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGL 187 R E E QR LE +G+ A R A LSYG QRR+EIAR + T P+LL LDEPAAG+ Sbjct: 126 REEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 185 Query: 188 NPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSD 247 N EK L +L+ +++ E G +LLIEHD+ L+MG+ DRI V+++GKPI G P V+ D Sbjct: 186 NATEKLGLRELLVKIKAE-GKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQKD 244 Query: 248 ERVIKAYLG 256 VI+AYLG Sbjct: 245 PAVIEAYLG 253 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 223 bits (569), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 115/257 (44%), Positives = 164/257 (63%), Gaps = 2/257 (0%) Query: 1 MSQPVKTM-LEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQ 59 MSQ T LE+ ++MR GL AVD S V ++ ++IGPNGAGKTT +N ISG+ + Sbjct: 1 MSQTNTTAALELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMK 60 Query: 60 PTSGEITLDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSG 119 PTSG + L G I Q++Q GLVR+FQ +F + TV EN+L A H + +L Sbjct: 61 PTSGRVKLFGHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQA 120 Query: 120 LLKTPSYRRSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLL 179 LL+T +RR E + + L LGL++ AN A LSYG QR + + + KP++LL Sbjct: 121 LLRTQKFRREEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLL 180 Query: 180 LDEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTG 239 LDEPAAGLNP E + +++ R+ + GV VLL+EHDM ++M ISD I+V+ +G+ I TG Sbjct: 181 LDEPAAGLNPSETEAFKEMVRRI-GQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATG 239 Query: 240 TPEQVRSDERVIKAYLG 256 +P ++++D VI+AYLG Sbjct: 240 SPSEIQNDPEVIRAYLG 256 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 151/253 (59%), Gaps = 3/253 (1%) Query: 8 MLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEITL 67 ++ V+ L+MRFGGL A+D +++ + E EV ++GPNG+GKTT FN ++G Y+ TSG I Sbjct: 20 LVGVTDLTMRFGGLTALDQLNMQINEGEVLGLLGPNGSGKTTFFNVLTGLYKATSGSIIY 79 Query: 68 DGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPSYR 127 G + Q ++ + G+ RTFQ RL +TV +N+++ +Q +N L L + ++R Sbjct: 80 KGQEVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMNHGLFFNLFQRKAFR 139 Query: 128 RSEQEALQRVAYWLEQLG--LTSLANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAA 185 + +V L L + GT + +RR+E+ R ++++PRLLLLDEP+A Sbjct: 140 AEYDAYVGKVEALLNIFSPPLVARMFEPVGTFTMIDRRRIEVCRALLSQPRLLLLDEPSA 199 Query: 186 GLNPQEKQELSQLIDRLR-REHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQV 244 G+ E + L I ++R + + ++LIEH+M++I I+DR +V +GK I GT ++ Sbjct: 200 GMTHDETEALMDDILQVRGKLENLTIVLIEHEMNVIERITDRCIVFNYGKKIAEGTYAEI 259 Query: 245 RSDERVIKAYLGE 257 +D V AYLGE Sbjct: 260 TADPNVQTAYLGE 272 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 147/255 (57%), Gaps = 21/255 (8%) Query: 9 LEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGEITLD 68 LE+ + RFG + G SL + + + A+IGPNGAGK+T+FN ISG + +SG+I L+ Sbjct: 6 LELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILLN 65 Query: 69 GVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPSYRR 128 G SIA Q +Q+ ++GL R+FQ +F ++V ENL A +L + YR Sbjct: 66 GSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCA------------VLWSLGYRY 113 Query: 129 SE-------QEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLLD 181 S Q+ QR +E++GL N EA LSY QR +EI + ++LLLD Sbjct: 114 SFWQRLNGLQDVNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLD 173 Query: 182 EPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTP 241 EP AG++ E +LI ++ G +L++EHDM ++ G++DRI V+ +G+ I TP Sbjct: 174 EPTAGMSRSESDAAVELIRKI--SAGKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTP 231 Query: 242 EQVRSDERVIKAYLG 256 + +R++ V +AYLG Sbjct: 232 DNIRNNPLVQQAYLG 246 >gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 152 bits (383), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/254 (36%), Positives = 142/254 (55%), Gaps = 13/254 (5%) Query: 5 VKTMLEVSTLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYQPTSGE 64 + + L V+ L +G V V+L V+ EV ++GPNGAGKTT F I G +G Sbjct: 1 MSSKLIVNGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGR 60 Query: 65 ITLDGVSIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENL-LVAQHQQVNTNLLSGLLKT 123 I LDGV I+R P H+ AQ GL Q +F+ ++V +N+ V + Q+VN L Sbjct: 61 IELDGVDISRLPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKAL------ 114 Query: 124 PSYRRSEQEALQRVAYWLEQLGLTSLANREAGTLSYGLQRRVEIARCMITKPRLLLLDEP 183 + + QR+ L L + L +A +LS G +RRVEIAR + T PR +LLDEP Sbjct: 115 -----NSAQLEQRLDTLLADLQIEKLRENQAMSLSGGERRRVEIARALATNPRFVLLDEP 169 Query: 184 AAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQ 243 AG++P E+ +++ R +E G+ VL+ +H++ +GI DR ++ G + +G P+ Sbjct: 170 FAGVDPIAVIEIQRIV-RFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDD 228 Query: 244 VRSDERVIKAYLGE 257 + ++E V + YLGE Sbjct: 229 IIANESVRRVYLGE 242 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 566,185 Number of extensions: 22321 Number of successful extensions: 278 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 63 Length of query: 258 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 177 Effective length of database: 921,564 Effective search space: 163116828 Effective search space used: 163116828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)